Recode v. 2.0 / Database of translational recoding events.

Details for "r200870"

Accession number	r200870 [export]
Locus name	AZ
Description	Ornithine decarboxylase antizyme AZ
Recode status	Reviewed

Organism

Genomic class	Eukaryota (Chromosome)
Organism	Heterodera glycines [details]

Sequence

GenBank IDs	CA939294.1,CA939300.1,CB279102.1,CB299320.1,CB375840.1,CB378807.1,CB379380.1
Sequence	mRNA of 631 nucleotides [sequence]

Recoding event

Event type	+1 Frameshifting (position: 118)
Description	AZ ORF0: 3.7e-10 ORF1: 8.4e-71


CTTTTGCATA CATTCATTCT CGCGCATTAC AAAATGTCGA TTATATCAAG TAAACCGATG AATATCTCGT
TTAGTAATTC CTGTAGTCCG GATTGCCCGG GCCTCACGTG GTGCTCCTGA CATCCCTAAC AGTGAGAACA
TAGACAGAGA TGCGGTTGCT GGTTTAGTAA AAAGTGTTGC TGAGGGTTGG TGTTGTCATC TGGCGGAGAA
GAACACGTTG GCACTGTTTA TTCCATCCAA ACTTTTCTCA TCTACTTTAT CGCGCGAGAA TTTTGTCGAT
CTGTTGGAGT ACTGTGAGGA GCACTTGAAG GTCCGTCGCA TTTTGGCTTG CTTCAACAAG TCGGACATCA
ATCCATGCCA GGGCATTCCA CGCGCCCTCC GTTGCATTGG CTTCACCCTC CTCCCGCCCG AACGTTACCC
CGCTGGCATT GACAAGAACA CCATTTTTGC GATGGTTTAC AAAATCTAAG CGCAGTCGAC GTCCTTCTCC
CCCCCCCCTT TCTCTATCTT TGTAAAAGAT CGACACAATT TTAAACGAGT TGTATTTTCT ATCCATGTAT
TCCTACAGAA AATAGCGTTT TTCATCCATT CACAGTGATG TCAAATAAAA GTGTGACCAA CAAAAAAAAA
A

Product

Product	OAZN_ORF1
Description	Ornithine decarboxylase antizyme AZ
Modifications	117..119:ribosomal_frameshift


MSIISSKPMN ISFSNSCSPD CPGLTWCSDI PNSENIDRDA VAGLVKSVAE GWCCHLAEKN TLALFIPSKL
FSSTLSRENF VDLLEYCEEH LKVRRILACF NKSDINPCQG IPRALRCIGF TLLPPERYPA GIDKNTIFAM
VYKI

Publication

Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]