Recode v. 2.0 / Database of translational recoding events.
Details for "r200873"
| Accession number | r200873 [export] |
| Locus name | AZ |
| Description | Ornithine decarboxylase antizyme AZ |
| Recode status | Reviewed |
Organism
| Genomic class | Eukaryota (Chromosome) |
| Organism | Meloidogyne chitwoodi [details] |
Sequence
| GenBank IDs | CD682409.1 |
| Sequence | mRNA of 487 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 63) |
| Description | The sequence seems incomplete, 5' of the CDS is missing; The position of the initiation codon is not identified; AZ ORF0: 0.046 ORF1: 2.3e-62 |
TGAGTAGTAC ACCGTTAAGT AATTGTTGTA GTCCCGGTTT TCCCCCCCTC ACGTGTTGCT CCTGACGTCC
CTAACGATGA AAATATAGAT AGAGATGCCA TTGCACGTAT AGTAAAAGGT GTAGGTGAGG GGTGGTGTTG
TCATTTGGCC GATAACTCAA TTGCTTTATT CGTTCCACCA AAATTGTTTA ACATCACTTT ATCGCGTGAA
CATTTCGTCA ATCTTCTTGA GTATTGCTTT GATCGGCTCA AAGTAAAGCG CGTTTTGGCT TGTTTTGAAA
AATCTGAGAT TGATCCACGC GAAGGAATTC CACGCGCTCT TAAATGCATT GGTTTCTCCG TTTTACCACC
AAATCGTTTT CCAAATTGGC TTGATCCGAA AACAACCTTT GCAATGGTAT ATTCTATCTA AACATGGACA
CATCTAAAAG CCGTATTGGA AAAATGATTA CCTTTTTACC CCTCTCTATA CACATATATC TTTTGCA
Product
| Product | OAZN_ORF1 |
| Description | Ornithine decarboxylase antizyme AZ |
| Modifications | 62..64:ribosomal_frameshift |
SSTPLSNCCS PGFPPLTCCS DVPNDENIDR DAIARIVKGV GEGWCCHLAD NSIALFVPPK LFNITLSREH
FVNLLEYCFD RLKVKRVLAC FEKSEIDPRE GIPRALKCIG FSVLPPNRFP NWLDPKTTFA MVYSI
Publication
- Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]