Recode v. 2.0 / Database of translational recoding events.

Details for "r200878"

Accession number	r200878 [export]
Locus name	OAZ3
Description	Ornithine decarboxylase antizyme OAZ3
Recode status	Reviewed

Organism

Genomic class	Eukaryota (Chromosome)
Organism	Macaca fascicularis [details]

Sequence

GenBank IDs	CJ483117.1,CJ486933.1,CJ487387.1,CJ489643.1,CJ489814.1,CJ490850.1
Sequence	mRNA of 818 nucleotides [sequence]

Recoding event

Event type	+1 Frameshifting (position: 290)
Description	OAZ3 ORF0: 9.8e-19 ORF1: 5.3e-87


AGATTCCTCG AGCACTGTTG GCCTACTGGA CTTTGCCACA GGGAGGCACT GAACTGAAAA ACTGCCTTGT
AACAGGTGTC GCCCCTCTGT CTACTCCCTT TCTTATATCA AGAGGGGAAA AACACGTAAC TACCTCTACC
CGATCTGGTC ACCATACGCC TATTACCTTT ACTGTTACAA GTACCGGATC ACCCTCCGGG AGAAGATGCT
GCCTCGTTGT TATAAAAGCA TCACTTATAA GGAAGAGGAG GACTTGACAC TCCAGCCCCG TTCCTGCCTC
CAGTGCTCCT GAGTCCCTAG CAGGCCTCCA GGTGGGCAAA AGCACCGAGC AGGGTAACCA CGACCAGCTT
AAAGAACTGT ATTCGGCTGG GAACTTGACG GTGCTAGCTA CTGATCCCCT GCTCCACCAG GACCCAGTAC
AGTTAGACTT TCACTTNCGC CTCACCCCCC AAACCTCCGC CCATTGGCAC GGNCTTCTCT GTGACCGTCG
ACTCTTCCTG GATATCCCAT ATCGGGCCTT GGATCAAAGC AACCGGGAAA GTTTGACTGC AACGCTGGAG
TATGTGGGAA AGAGGACAAA TGTGGACTCC GGGTTTGGGA ACTTCCAGAA TGATCGGAAC GACAGAGGGG
CGCTGGTGCG GCCCTTAACT TCATGGGCTT TGAGGTGGTC AAACAAGTGA CCCTTGCCTC CCTTCCTGGA
CAATGTCATT TTTTTGGGGA ATCCCTTGAA AGGATGTTGG CACCTGCCCA TGAAGCCTCT TAACATGCTT
ATTCAACGCT TTAGGGGGCG GAAACCTTAG ACCTGAAAAT AGGGGCCC

Product

Product	OAZ3_ORF1
Description	Ornithine decarboxylase antizyme OAZ3
Modifications	289..291:ribosomal_frameshift


MLPRCYKSIT YKEEEDLTLQ PRSCLQCSES LAGLQVGKST EQGNHDQLKE LYSAGNLTVL ATDPLLHQDP
VQLDFHXRLT PQTSAHWHGL LCDRRLFLDI PYRALDQSNR ESLTATLEYV GKRTNVDSGF GNFQNDRNDR
GALVRPLTSW ALRWSNK

Publication

Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]