Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200880"

Accession numberr200880 [export]
Locus nameAZ
DescriptionOrnithine decarboxylase antizyme AZ
Recode statusReviewed

Organism

Genomic classEukaryota (Chromosome)
OrganismBursaphelenchus xylophilus [details]

Sequence

VariantKa4
GenBank IDsCJ979174.1,CJ980047.1,CJ980437.1,CJ981142.1,CJ981263.1,CJ981361.1,CJ981516.1,CJ982573.1,CJ984323.1,CJ985769.1,CJ985981.1,CJ986817.1,CJ987169.1,CJ987483.1,CJ987938.1,CJ989363.1,CJ990870.1
SequencemRNA of 539 nucleotides [sequence]

Recoding event

Event type+1 Frameshifting (position: 142)
DescriptionAZ ORF0: 1.7e-10 ORF1: 2.5e-68
TGCAGTACGG TCCGGAATTC CCGGGCTCAC TTGCTCGACT CGTTTCAGCG CTCAAGAGAA AAAATGGCCA TGATTTCCAA TAACGTCTCT AATTCGTCTA ATTTCTGCAG TCGGGGCGGT ACAGGCGCCC CGTGTTGTTT TTGACGCCCC TCCAAGTGAT CCAGACGCAA GTATAGACTC AGACGCGCTT TCCGGTCTCG TAAAACAAGT CAGCGAAGAA TGGTGTGCCC ACATTCCGGA GAAGAAGACC CTCGCCCTGT TCCTGCCCCA CAACCAACTG TCGTCAAAGC TGAGCCGCGA GCACTTTGTG AACCTCCTCG AGTATTGTGA AGATGAGCTC GGGTTCAACA AGGTGCTCGC CTGCTTCAAC CGCGACGGTC TGGACGCCAA GCAGGGAATC CCCAGGGCCC TACGTTGCAT CGGCTTCAAT GTGCTTGCCC CCGAACACTT CCCATCGTGT TTGGACAAGT CGAAGTTGTT CTGTATGGTC TACCACATCT AAATCAATGT GGCAATGAAG AATATGGGGT GTACGGCGA

Product

ProductOAZN_ORF1
DescriptionOrnithine decarboxylase antizyme AZ
Modifications141..143:ribosomal_frameshift
MAMISNNVSN SSNFCSRGGT GAPCCFDAPP SDPDASIDSD ALSGLVKQVS EEWCAHIPEK KTLALFLPHN QLSSKLSREH FVNLLEYCED ELGFNKVLAC FNRDGLDAKQ GIPRALRCIG FNVLAPEHFP SCLDKSKLFC MVYHI

Publication