Recode v. 2.0 / Database of translational recoding events.

Details for "r200883"

Accession number	r200883 [export]
Locus name	AZ
Description	Ornithine decarboxylase antizyme AZ
Recode status	Reviewed

Organism

Genomic class	Eukaryota (Chromosome)
Organism	Meloidogyne javanica [details]

Sequence

GenBank IDs	CK427345.1,CK427355.1,CK427446.1
Sequence	mRNA of 643 nucleotides [sequence]

Recoding event

Event type	+1 Frameshifting (position: 138)
Description	AZ ORF0: 1.9e-10 ORF1: 2.4e-67


AGTGAATTTA TTATCTTATT CAAAAAATTC ATCAGTTAAC AAATAAAATG TCGATATTAT CAAATAAACC
GATAATGAGT AGTACGCCGT TAAGTAATAG CTGCAGTCCC GGCTGCCCCG GCCTCACGTG TTGCTCCTGA
CAGCCCTAAC GATGAAAATG TAGATAGAGA TGCTGTTGCT CGTATAGTAA AAGGTGTTGG TGAGGGATGG
TGTTGTCATT TGGCCAATAA CTCAATTGCT TTATTCATTC CATCTAAATT GTTTGACATC ACTTTATCGC
GTGAGCATTT TGTCAATCTT CTTGAATACT GTGAAGAACA TCTTAAAGTC AAACGTGTTT TGGCCTGTTT
TGACAAATCG GAGATTGACC CTCGTGAGGG GATTCCACGC GCTCTCAAAT GTATTGGCTT TTCCGTTCTT
CCACCAAATC GTTTTCCAAA TTGGCTTGAT CCGAAAACAA CTTTTGCAAT GGTTTATACA ATCTAAACAT
GGAGAACTTC TTTAAAAAGC CTAACTTTGG AGATGATATT TTCTTTACTA TAAGCACGGC CTCCTCCTCT
CTATCTATCT AACATAAATA TCCTTAAATA TCCACTACCT ATTTTACTCT TGACATTCTA CAAATATAAA
AAATATTTTT TTG

Product

Product	OAZN_ORF1
Description	Ornithine decarboxylase antizyme AZ
Modifications	137..139:ribosomal_frameshift


MSILSNKPIM SSTPLSNSCS PGCPGLTCCS DSPNDENVDR DAVARIVKGV GEGWCCHLAN NSIALFIPSK
LFDITLSREH FVNLLEYCEE HLKVKRVLAC FDKSEIDPRE GIPRALKCIG FSVLPPNRFP NWLDPKTTFA
MVYTI

Publication

Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]