Recode v. 2.0 / Database of translational recoding events.

Details for "r200884"

Accession number	r200884 [export]
Locus name	AZ
Description	Ornithine decarboxylase antizyme AZ
Recode status	Reviewed

Organism

Genomic class	Eukaryota (Chromosome)
Organism	Meloidogyne incognita [details]

Sequence

GenBank IDs	CK983424.1,CK983435.1,CN578165.1,CN578223.1
Sequence	mRNA of 638 nucleotides [sequence]

Recoding event

Event type	+1 Frameshifting (position: 136)
Description	AZ ORF0: 1.9e-10 ORF1: 2.4e-67


TGAATTTATT ATCTTTTTCA AAAAATGGGT CAGTTAACAA ATAAAATGTC GATATTATCA AATAAACCGA
TAATGAGTAG TACGCCGTTA AGTAATAGCT GCAGTCCCGG CTGCCCCGGC CTCACGTGTT GCTCCTGACA
GCCCTAACGA TGAAAATGTA GATAGAGATG CTGTTGCTCG TATAGTAAAA GGTGTTGGTG AGGGATGGTG
TTGTCATTTG GCCAATAACT CAATTGCTTT ATTCATTCCA TCTAAATTGT TTGACATCAC TTTATCGCGT
GAGCATTTTG TCAATCTTCT TGAATACTGT GAAGAACATC TTAAAGTCAA ACGTGTTTTG GCCTGTTTTG
ACAAATCGGA GATTGACCCT CGTGAGGGGA TTCCACGCGC TCTCAAATGT ATTGGCTTCT CCGTTCTTCC
ACCAAATCGT TTTCCAAATT GGCTTGATCC GAAAACAACT TTTGCAATGG TTTATACAAT CTAAACATGG
AGAACTTTTT TAAAAAAGCC TAACTTTGGA GATGATATTT TCTTTACTAT AAGCACGGCC TCCTCCTCTC
TATCTATCTA ACATAAATAT CCTTAAATAT CCACTACCTA TTTTAATTAC TCTTGACATT CTACAAATAT
AAAAAAAA

Product

Product	OAZN_ORF1
Description	Ornithine decarboxylase antizyme AZ
Modifications	135..137:ribosomal_frameshift


MSILSNKPIM SSTPLSNSCS PGCPGLTCCS DSPNDENVDR DAVARIVKGV GEGWCCHLAN NSIALFIPSK
LFDITLSREH FVNLLEYCEE HLKVKRVLAC FDKSEIDPRE GIPRALKCIG FSVLPPNRFP NWLDPKTTFA
MVYTI

Publication

Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]