Recode v. 2.0 / Database of translational recoding events.
Details for "r200894"
| Accession number | r200894 [export] |
| Locus name | OAZ2 |
| Description | Ornithine decarboxylase antizyme OAZ2 |
| Recode status | Reviewed |
Organism
| Genomic class | Eukaryota (Chromosome) |
| Organism | Leucoraja erinacea [details] |
Sequence
Recoding event
| Event type | +1 Frameshifting (position: 298) |
| Description | The sequence seems incomplete, 3' of the CDS is missing; OAZ2 ORF0: 5.8e-11 ORF1: 7.1e-92 |
CTGGAAGCGG CGGCGGGCGG AGGGAGGGAG GGAGAGAGGC GGGGAGTGTG TGTGTGTGTG TGAGGGCGGG
CGGGCGGCGA CAACATTACC CACGACGCGG CCTCCGTCTG CGGCCGGATG GTGAGGAGCT CCGTCGAGCG
GATACTAAAC AGCCACTACT TCGGTAAAGA GAGAGAGCAG AGCCCAGCGG CGCCCGGCGG CGGCATGAGG
AACGGCCAGG AGAGTAATAT TCCTTTGTGT AGTACCTCCC AGCAACAATA CTGCAGGCAC CTCGGTCCAG
GGCCTCTGTG GTGCTCCTGA TGCCCCTCAC CCATCTTTGA AGATCCCGGG TGGGCGAGGA AACGGAAGGG
ATCACACTCT TGCAGCTCTC TTGCATGCGG ATGAGAAGCT AACCGTAACA CAAGATCTAC CAGCAAATGG
AAAACAACAC ATCATCCACT TTCAGTACAA GTTGACAGAC TCCAAGGTCT CCAAATGGAA TGCAGTTTTC
TCCAAGAATA ATCTCTTTGT GGAGATTCCT GATGGCATTT TGGCAGAAGG AAGCAAAGAA GGGTTAACGG
TGCTGTTAGA ATTTGCTGAA GAGAAGCTGA AGGTGGAGTA TGTATTTGTC TACTTCTCCC AAAACAGAGA
AGATCGAGCC TTTCTTTTGA GGACATTCAG CTTCATGGGC TTTGAGATTG TGAAACCAGG CCATCCGTCA
GTTCCAGCTC GGCCTGGTGT CTTGTTCATG GTGTACTCCA TTGATCAGTC GTTATCTGA
Product
| Product | OAZ2_ORF1 |
| Description | Ornithine decarboxylase antizyme OAZ2 |
| Modifications | 297..299:ribosomal_frameshift |
MRNGQESNIP LCSTSQQQYC RHLGPGPLWC SDAPHPSLKI PGGRGNGRDH TLAALLHADE KLTVTQDLPA
NGKQHIIHFQ YKLTDSKVSK WNAVFSKNNL FVEIPDGILA EGSKEGLTVL LEFAEEKLKV EYVFVYFSQN
REDRAFLLRT FSFMGFEIVK PGHPSVPARP GVLFMVYSID QSLS
Publication
- Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]