Recode v. 2.0 / Database of translational recoding events.

Details for "r200900"

Accession number	r200900 [export]
Locus name	AZL
Description	Ornithine decarboxylase antizyme AZL
Recode status	Reviewed

Organism

Genomic class	Eukaryota (Chromosome)
Organism	Lipochromis sp. [details]

Sequence

Variant	matumbi hunter
GenBank IDs	DB859357.1,DB860568.1,DB862111.1,DB862372.1,DB864801.1,DB870209.1,DB873104.1
Sequence	mRNA of 714 nucleotides [sequence]

Recoding event

Event type	+1 Frameshifting (position: 133)
Description	The sequence seems incomplete, 5' of the CDS is missing; The position of the initiation codon is not identified; AZL ORF0: 6.3e-24 ORF1: 3e-126


GCTCGCGAGA AAGAAGGAAA AACGCAGCCT CTTACTATCA TGGCGAATTT GAGTAGCGGT ATTTGTGACA
TGATTGGGAA CCTTTCCCTG CACTGTAGTA GTACCCGCGG CCCGGGGCCT CTGTGGTGCT CCTGATGCCC
CTCTCCCACC CCTGAAGATC CCAGGTGGGC GAGGGAATGG CACACGGGAT CACACTCCTT CAGCTCGACT
GCTCTACTCA GATCGAAAGT TGACTGTAAC GGAGGAACCG CCAGGGAACG GTCGCCCTGG GATACTCCAC
TTCCAAAGTC GTCCTACCGT TACTAAGACA ATACAGTGGG ATGCTGTCCT AAGCAGCAGT GCACTCTACG
TGGAGATACC TCTGGACCCT CTTCCTGATG GCAGCAAGGA GAGTTTCGCA GCTCTCTTGG AGTATGCTGA
AGAACATCTG AAAGTCGTTA GCGTGTTTGT CTGCTTTTAC AAGAACAGAG ATGATCGTGC TAAACTGGTG
CGTACCTTCA GTTTCCTGGG CTTTGAGATT GTGAAACCAG GCCATGCCCT CGTCCCACCT CGACCCGACG
TTTTCTTCAT GGCCTACAAC TTTGACAGGG ACTCCTCAGA CGAGGAGTAG CCCGCCGGAC AACCTCCCCT
GCTTACGTCT TTTGTTTTCC TTACTATTGT ATGGNTTCCC CCATTCAGTC GCAGCTTACT CACATACCGT
CTGTGTTAAA CCCT

Product

Product	OAZL_ORF1
Description	Ornithine decarboxylase antizyme AZL
Modifications	132..134:ribosomal_frameshift


AREKEGKTQP LTIMANLSSG ICDMIGNLSL HCSSTRGPGP LWCSDAPLPP LKIPGGRGNG TRDHTPSARL
LYSDRKLTVT EEPPGNGRPG ILHFQSRPTV TKTIQWDAVL SSSALYVEIP LDPLPDGSKE SFAALLEYAE
EHLKVVSVFV CFYKNRDDRA KLVRTFSFLG FEIVKPGHAL VPPRPDVFFM AYNFDRDSSD EE

Publication

Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]