Recode v. 2.0 / Database of translational recoding events.

Details for "r200901"

Accession number	r200901 [export]
Locus name	AZ
Description	Ornithine decarboxylase antizyme AZ
Recode status	Reviewed

Organism

Genomic class	Eukaryota (Chromosome)
Organism	Idiosepius paradoxus [details]

Sequence

GenBank IDs	DB912841.1,DB914374.1,DB915016.1,DB916854.1,DB918091.1,DB918471.1,DB918744.1,DB919717.1,DB920015.1
Sequence	mRNA of 800 nucleotides [sequence]

Recoding event

Event type	+1 Frameshifting (position: 190)
Description	AZ ORF0: 3e-06 ORF1: 1.6e-51


TACACAAAGG TACCGATAGT GGCCTGCAAC TGCCCAGTTA TGTTGAGTGC CTCTAAGGCA ATTACTATAG
ACGAAAACTT TGGCCCGATA CTAAAATCAG AAGAAGCAAT GCCTTCAATA CAGCGTAGTG ATACGTGGGA
GGCCGAGAGA TACTGTATAT CTCTCAGTAG TGGGCCTCGG TGGTGTTCCT GACGCCCCCC ACGCCGTCAT
GTCAGAAGTG GCAGAGGGCA GCGGTGTGGG GATCATAAAA GAGCCCACTG TCAATGCCAA AGGCTCATAT
TTTGGGCACC TAAGGGGTTT GGCAAAAGCA CAAGTTGCCT CGAACTTGTG CTTCAAGGTG GAAGTCGTGG
AAGGTCTACA GGTTACTTGG GAGACGATGC TGATTGATGG AAAACTATTT GTAGAAATTC CCTCGGGGAT
CCTACCAGAA GGCTCTAAAG AAGGGCTGGT TACTCTGCTG GAATTTGCCG AGGAAAAGCT TCAATGCAAG
AATGTCATTG TCTTTGTTAG AAGAGACCGA AATAACAGAA GTTCTCTCAT AAAGACTTTT ATGTTCTTGG
GTTTTGAAGT AGTTTCTCCT GCTAACTGCT TGGTTCCCAA CATCGGAGAC CTGATCTTCA TGGCTTACAC
CATTGCTGAT GATAACGACC TCTCAGACTG AATGACCCCT TGAAATTAGG TTCATTGTTT GGCATCTGGG
ACTTTTTAAT ATGAATTTAG AATTTAGTAA TTGTCTCTGA CAGTGTTTAT ATATTTAACT TTGTAGCAAT
CCTGCTCCAG TTTTCTTTTA CTTTAGATGG

Product

Product	OAZM_ORF1
Description	Ornithine decarboxylase antizyme AZ
Modifications	189..191:ribosomal_frameshift


MPSIQRSDTW EAERYCISLS SGPRWCSDAP HAVMSEVAEG SGVGIIKEPT VNAKGSYFGH LRGLAKAQVA
SNLCFKVEVV EGLQVTWETM LIDGKLFVEI PSGILPEGSK EGLVTLLEFA EEKLQCKNVI VFVRRDRNNR
SSLIKTFMFL GFEVVSPANC LVPNIGDLIF MAYTIADDND LSD

Publication

Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]