Recode v. 2.0 / Database of translational recoding events.
Details for "r200907"
| Accession number | r200907 [export] |
| Locus name | AZ |
| Description | Ornithine decarboxylase antizyme AZ |
| Recode status | Reviewed |
Organism
| Genomic class | Eukaryota (Chromosome) |
| Organism | Ixodes scapularis [details] |
Sequence
Recoding event
| Event type | +1 Frameshifting (position: 212) |
| Description | AZ ORF0: 1.4e-21 ORF1: 2.9e-92 |
TGGCATTAGG CCGGGGAGAG GAGTCCGTAT CCACACCACC CTCTTGGGCG GTATGAATCT GTCGGCTGAT
TTAGCCTTAT CAAGTTTAAG TAGTAAAGAG ACCGCCATGC CTGCCGTTAG TAATTTTAGT AGTAGCGGTC
CGGACAACAC CATGAGGACG CTGCTGCGTC ACTACTGCAT CTCTCTGGGT GCAGGGCCTC TGTGGTGCTC
CTGATGCGCC CCATGCCGCC GACGTGTCGC TGTCAAGCAC AGGAGGCAGC GGCGTGGGGT CTCTAAAAGC
GCCCCCTGTG GACGACTCCC ATGTTGGAAA GGGAGAACTT TTGGCGCGGC AGTGGAGCCA GGAAGCGGTG
CGGCTGACGT TCCGCTGCCG TCTGACGGAG AACACGGAGG TGGGCTGGGA GACGGTTCTG TGCCAGGGCC
GCCTGTTTGT CCAGCCGCCC AGTTGCGCCC TGCCCGAGGG CTCGAGAGAG GCCTTTGTCA CCCTGCTGGA
GTTCGCTGAG GAGCAGCTCG GCTGCGACCA CGTCCTCGTC TTCTTCTCCA AGGACTGTCC GGACAGGGCT
AGCATTGTGC GCACCTTCAT GTTTCTGGGC TTCACGACGC TGACGCCGGG CCATCGCCTG GTGCCTCCGT
CTGCCTCGGA AGGGGTGCTG TACATGGCCT ATGCCATCGA GTGAAGAGGA GGCGAACAAC TGCTCCTGGC
AAACCACTGC TGCGTCGATA GATTCTTTTT TTTTTGTGGG GAAACATCCA AGCAAGCGTA ACAAGAGGC
Product
| Product | OAZA_ORF1 |
| Description | Ornithine decarboxylase antizyme AZ |
| Modifications | 211..213:ribosomal_frameshift |
MNLSADLALS SLSSKETAMP AVSNFSSSGP DNTMRTLLRH YCISLGAGPL WCSDAPHAAD VSLSSTGGSG
VGSLKAPPVD DSHVGKGELL ARQWSQEAVR LTFRCRLTEN TEVGWETVLC QGRLFVQPPS CALPEGSREA
FVTLLEFAEE QLGCDHVLVF FSKDCPDRAS IVRTFMFLGF TTLTPGHRLV PPSASEGVLY MAYAIE
Publication
- Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]