Recode v. 2.0 / Database of translational recoding events.

Details for "r200928"

Accession number	r200928 [export]
Locus name	OAZ3
Description	Ornithine decarboxylase antizyme OAZ3
Recode status	Reviewed

Organism

Genomic class	Eukaryota (Chromosome)
Organism	Macaca nemestrina [details]

Sequence

GenBank IDs	DY744382.1,DY744383.1,DY746433.1,DY746434.1,DY746882.1,DY746883.1,DY761045.1
Sequence	mRNA of 753 nucleotides [sequence]

Recoding event

Event type	+1 Frameshifting (position: 240)
Description	OAZ3 ORF0: 9.8e-19 ORF1: 1.1e-132


TGAACTGAAA ACTGCCTTGT AACAGGTGTC GCCCCTCTGT CTACTCCCTT TCTTATATCA AGAGGGGAAA
AACACGTAAC TACCTCTACC CGATCTGGTC ACCATACGCC TATTACCTTT ACTGTTACAA GTACCGGATC
ACCCTCCGGG AGAAGATGCT GCCTCGTTGT TATAAAAGCA TCACTTATAA GGAAGAGGAG GACTTGACAC
TCCAGCCCCG TTCCTGCCTC CAGTGCTCCT GAGTCCCTAG TAGGCCTCCA GGTGGGCAAA AGCACCGAGC
AGGGTAACCA CGACCAGCTT AAAGAACTGT ATTCGGCTGG GAACTTGACG GTGCTAGCTA CTGATCCCCT
GCTCCACCAG GACCCAGTAC AGTTAGACTT TCACTTCCGC CTCACCCCCC AAACCTCCGC CCATTGGCAC
GGCCTTCTCT GTGACCGTCG ACTCTTCCTG GATATCCCAT ATCGGGCCTT GGATCAAGGC AACCGGGAAA
GTTTGACTGC AACGCTGGAG TACGTGGAAG AGAAGACAAA TGTGGACTCC GTGTTTGTGA ACTTCCAGAA
TGATCGGAAC GACAGAGGTG CCCTGCTGCG GGCCTTCAGC TACATGGGCT TTGAGGTGGT CAGACCAGGT
CACCCTGCCC TCCCTCCCTG GGACAATGTC ATCTTTATGG TGTATCCCCT TGAAAGGGAT GTTGGCCNAC
TGCCCAGTGA GCCTCCTTGA CGTGCTTATT CNACGCTTTG AGGGGCTGGA GCT

Product

Product	OAZ3_ORF1
Description	Ornithine decarboxylase antizyme OAZ3
Modifications	239..241:ribosomal_frameshift


MLPRCYKSIT YKEEEDLTLQ PRSCLQCSES LVGLQVGKST EQGNHDQLKE LYSAGNLTVL ATDPLLHQDP
VQLDFHFRLT PQTSAHWHGL LCDRRLFLDI PYRALDQGNR ESLTATLEYV EEKTNVDSVF VNFQNDRNDR
GALLRAFSYM GFEVVRPGHP ALPPWDNVIF MVYPLERDVG XLPSEPP

Publication

Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]