Recode v. 2.0 / Database of translational recoding events.

Details for "r200933"

Accession number	r200933 [export]
Locus name	AZ
Description	Ornithine decarboxylase antizyme AZ
Recode status	Reviewed

Organism

Genomic class	Eukaryota (Chromosome)
Organism	Lentinula edodes [details]

Sequence

GenBank IDs	EB012288.1,EB012376.1,EB015471.1,EB016282.1,EB017645.1
Sequence	mRNA of 874 nucleotides [sequence]

Recoding event

Event type	+1 Frameshifting (position: 247)
Description	The sequence seems incomplete, 3' of the CDS is missing; AZ ORF0: 9.1e-45 ORF1: 1.5e-128


TACAAACCCC CAAACTCATA CTTAAGAATT TCTTCACCGC AATCAAGTTG GCATATGTCG TTGAAAAACA
ATTCGAATTT ATCCAATCAA AGATTTAGTC TTTGCCCCAC CAACGGCCGT CAAACCGTTG GAGATGGGGC
TGTAACTCTC GACACTCCTA GTGTGCTTGC TGTGTGCCAG ATGCAGGGCA CTGATGACAT GTACTACTAT
TCTACTACGT TCTCTGGCGG GCCCGGGTGG CGCTTTTGAC ACACCCAAAG CAAAATGCCC TCCTGACCGA
GGGTCGTCGG AATGTGTGAC AGGCATCCCG GCGCCACTTA CCCCCAATCT CTCCATATCT TCTTCTCCCG
AATCCTACTA TACTTCTGCA TATCCTAAGC AGCACACATA TGTTCGCGGT TCTTTTCCTT TCCCAAAAAC
CTCAGTTGGA CCTTGCGCTA TCCCAGCTCG AACCAGCAGT GGTAGCTCTG AATCATCTAC ACCTCCCCTC
ACTCCTGATG ACGGTAGTGA CTGTAGCGAT CGTAGCATCT CTCCCTCTTT GATGCAGCAG AAGGATGCCA
TGGACTTTCT TATGACGCTT TTCCCAACTG GTCTTGGAGC TCTTCCTTAT GCGAAGAGTA TCTCCATTTC
GGCCCCGAAC ATGGGTTCAG CTTTCAACGG AATGGTCCTT GAACTACCTG GAAAACCCAG AACACTCTAC
GTGGACGCAA AGAACGCAGA GAGCGTCAGC CTCAGAGAAA GCGTCGTCGC ACTTTTGGAT CTTGCGGACG
ACCAGCTGGA GTGCTCTGCT CTCGTGATTG TTCTGGAACG GTCGTCACCG GCCCTGGGAG AAATTCTGCA
TTCTCTCATG TATGTAGGTG GCTCGGTCGT CACT

Product

Product	OAZF_Basidiomycota_ORF1
Description	Ornithine decarboxylase antizyme AZ
Modifications	246..248:ribosomal_frameshift


MSLKNNSNLS NQRFSLCPTN GRQTVGDGAV TLDTPSVLAV CQMQGTDDMY YYSTTFSGGP GWRFDTPKAK
CPPDRGSSEC VTGIPAPLTP NLSISSSPES YYTSAYPKQH TYVRGSFPFP KTSVGPCAIP ARTSSGSSES
STPPLTPDDG SDCSDRSISP SLMQQKDAMD FLMTLFPTGL GALPYAKSIS ISAPNMGSAF NGMVLELPGK
PRTLYVDAKN AESVSLRESV VALLDLADDQ LECSALVIVL ERSSPALGEI LHSLMYVGGS VVT

Publication

Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]