Recode v. 2.0 / Database of translational recoding events.
Details for "r200944"
| Accession number | r200944 [export] |
| Locus name | AZ |
| Description | Ornithine decarboxylase antizyme AZ |
| Recode status | Reviewed |
Organism
| Genomic class | Eukaryota (Chromosome) |
| Organism | Lysiphlebus testaceipes [details] |
Sequence
Recoding event
| Event type | +1 Frameshifting (position: 285) |
| Description | The sequence seems incomplete, 3' of the CDS is missing; AZ ORF0: 4.1e-10 ORF1: 1.4e-82 |
AAAAATATAT AAAAATATAT AATTTTATTT CTCCTAAAAG GTGAAATATT TTTTTTAAAT AATTATTTGT
AAAATCGTCA AGATTTCACG AAAAAAGAAG CATGAGTATC AGTTCACTTT CGTTAATTAA TTGGAAAAGT
AGTAAAAACG CTGAGATTAT GCCGAGTTTA ATATCAAGTA ATTGGGAATC ATCAAGTAAA ACAATGGAAG
AAACACTTGA TGAGATGAGT TCTCAGCAAC AATACTATTC CATAACATTG GGTGTGGGGC CTCTGTGGTA
CTCCTGATGC GCCCCATGCC GCTTTATCTG TATCCGCTGT TAACACAGAG AGCCGCGGTG TGGGGATTAA
ACAGAGTCAT CTCTCTGTGA GCTCACATAT TGTATCAGAA GAGGAATTGT TAAAAGCTGT TAAAAATAAC
GAGTCACTAC GTTTAGCCTT TACCCTTCAT TTGACAGAAA CAACATCAGT TCAATGGGAA ACAATAATAT
GGCGTGGTAC ACTTTATATA TGTGTACCAA GTTGTTTATT ACCTGAAGGT TCAAAAGAAG GTTTTGTATC
ATTATTGGAA TATGCTGAAG AGACATTACA ATGTCACAAT ATTGTTGTTT GTCTTCGTAA AGATCGTACT
GATAGAGCCA TGTTAGTTCG TACTTTCATG TTTCTTGGAT TCAATGTACT ACCACCAAAT CATAATTTAA
TACCACCACA ATGTGATTCT GGTAATCTCT AC
Product
| Product | OAZA_ORF1 |
| Description | Ornithine decarboxylase antizyme AZ |
| Modifications | 284..286:ribosomal_frameshift |
MPSLISSNWE SSSKTMEETL DEMSSQQQYY SITLGVGPLW YSDAPHAALS VSAVNTESRG VGIKQSHLSV
SSHIVSEEEL LKAVKNNESL RLAFTLHLTE TTSVQWETII WRGTLYICVP SCLLPEGSKE GFVSLLEYAE
ETLQCHNIVV CLRKDRTDRA MLVRTFMFLG FNVLPPNHNL IPPQCDSGNL Y
Publication
- Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]