Recode v. 2.0 / Database of translational recoding events.

Details for "r200952"

Accession number	r200952 [export]
Locus name	AZ
Description	Ornithine decarboxylase antizyme AZ
Recode status	Reviewed

Organism

Genomic class	Eukaryota (Chromosome)
Organism	Heterorhabditis bacteriophora [details]

Sequence

GenBank IDs	ES408646.1,ES409780.1,ES410567.1,ES411071.1,ES411545.1,ES412181.1,ES413997.1,ES414281.1
Sequence	mRNA of 693 nucleotides [sequence]

Recoding event

Event type	+1 Frameshifting (position: 129)
Description	The position of the initiation codon is not identified; AZ ORF0: 1.2e-07 ORF1: 2.5e-67


GTACAAAAAA GTTGGGTGTG TGTGGTACTC TGCGATTCTC AAACATGTCT AGCAGTATTA TTAATCTGAG
TAGTAATATT TTCTCTAATA CCTGTGAGCC CAAGGACGGC GCAGCCGGAT GGTGTTTTTG ACGTCCCCCA
AAGTGTAACC AGTCGGAAAG ATGATGTTGC GAACCGTGTA GCAGCTGTAT CAAAGGAATG GCGTTGGGGT
ATGTTAGATG GGAAATCACT CGCTATCGTT ATCCCTGCTG AGCAGAATCC TCGCGAAATC TCGAAAGAGC
GTTTCGTATC GCTCTTAGAG TACTGTGAGG AGGAACTCGG TGTTGACCGT GTTGTGGCCG TTTTTGAGAA
GCCTGGATTG TCAATGTCGG AGGGTTTCCC CCGAACTCTT CGGTATATTG GCTTCCGAGT CATGCCACCG
GAAATTATCC CGGAGCCACT ATCGAATCAG CAATACTTCG CCATGAGTTA CGTAATTTAA GTTCAATAAT
ATTTAACTGT CCACTTTTAG AACCCAGTTT TACAGTATCA TCAACATTAC CCAAACCTAA TTCCTTTTTT
TTTTGTTGCG AGGTGCCATC ATTTCATCCT TCCGACTGAG CCTCGTATTA TATTGTTTAA ATATCATTAA
CCGTTGTTTT GTAACATGTT CTAAATCGGT AAATATTTTT AGTCTTCAAA AAAAAAAAAA AAA

Product

Product	OAZN_ORF1
Description	Ornithine decarboxylase antizyme AZ
Modifications	128..130:ribosomal_frameshift


TKKLGVCGTL RFSNMSSSII NLSSNIFSNT CEPKDGAAGW CFDVPQSVTS RKDDVANRVA AVSKEWRWGM
LDGKSLAIVI PAEQNPREIS KERFVSLLEY CEEELGVDRV VAVFEKPGLS MSEGFPRTLR YIGFRVMPPE
IIPEPLSNQQ YFAMSYVI

Publication

Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]