Recode v. 2.0 / Database of translational recoding events.

 

Details for "r201052"

Accession numberr201052 [export]
Locus nameTF
Descriptionviral protein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismSeal louse virus [details]

Sequence

GenBank IDsAF315122
Sequencess-rna of 1983 nucleotides [sequence]
OrganisationPseudoknot (1) [see structure]

Recoding event

Event type-1 Frameshifting (position: 1,701)
GCCAUUGUAC UGGGCGGAGC CAACGAGGGC GAGCGUACGG CACUUUCCGU AGUGACAUGG AACAAGAACA CGGUGGUCAA GGUUACGCCG GAGGAAACCG UGGAGUGGUC GGCACUUACC CUUUUGUGUA UCUUGGGUAA CGUUACUUUC CCGUGUGAUU CGCCUCCGUG UGCGCCGUGC UGCUACGAGA ACAACCCGGA GAACACACUC AAAAUGCUGG AACUUAACGC AGAUAGGCCA GGUUAUGACG AGCUGCUACA AGCAGCGCUG CGCUGCAAUG GUCGGCGUGG CAAAAGAUCC GUUGCCUCGU CUCUUCUGAC CUACCGAACC ACGCAACCAU ACGUCGCUAG AUGCGAUUCG UGCGGUAUAA AACCAUGUAA CAGCCCUAUU GCCAUUGAAA AUAUACAGUC GAUGGCUUCA GACGGGACUA UAAGGAUCCA GGUCUCCGCC CAUCUGAAAU UGAACAAGGC UCAGGUGUAU GAUGAUAAAA AGAUUAGCUA CAUGUAUGCA UCUAAUAUUG AAGAGGCUAA CCUGUACACC UUGUAUGUGA GAACUACUCA CAAAUGCCAA UUGUUGGAUU CCGGUGGUUA UUUCAUUAUA GCCAAAUGUC CGGAAGGCAA CGAACUGGAG GUGGGUUUCA CGGGUAAAUA CCCCCACAGC UGCCGUACGA CUUUCUCGCA CAAACACAGA UUCUUAGGCA GAGAAAGGAC UCGUAAGUCU ACCAUUGGAG GCAAACAAGU AGCGUGUACU ACGUGCGCUG CCGUCGAUAA CAGAGAACAA CUGCCUGUUC ACAUGCCUCC UGAUAUUCCU GAUGAUGAGU UGUUGACAUC AAGCGCCGGC AAACCAGUUA UAAAAAUUCG CCCAACCAUG AAAACAAGGU AUCACUGCCA GUGCAAAGAA GGUGAUAAGG ACGCGGUGGU GACUACCCAA ACCACCGUUG AAGGAUGCAC AGAAUACCAC UGUAAGACGU GGAUAUCUCA GCACACUAAA UGGCAAUAUA ACUCUAGAUU UGUGCCGCGU GCUGAGGAGA AGGAACCUAA AGCCUACAUC ACUGUACCCU UUGCCGUGGU UAACACCACA UGCUACCUUC CGCAGGCAGC AGAGCCGGUA ACUAAAUUUG AACACAGAAG ACUCAUUAUC ACUGUUAGCU CUCCGCAUGA GUCCCUGCUG ACAGUACGAU CACUAGGCGA CAGGUCUAUU CGUUACCACC ACUGGCAUAG UGGGACUACC ACGCUGAAUU UUACCCUACC AAGAUCAGGG UUAGAGUACA GGUGGGGCAA CAACGAACCC GUCCGCGUGU GGGGGCAACA CUCCUCACAA UGGGACCCGC ACGGAUUGCC ACAUAGUGUG UUCCUUUACU AUCUAGACAA GCACCCUCUG CUGACUGCCU CUGUUAUCAC AGUUACAGCA CUCUUAACUG UAAUAGGUUU CGCGCUAGCA GCUUGGCUUA UCUGCAGCGC GAGGAACAAG UGCUUGACAC CAUACGCACU UACUCCGAAU GCACAAGUGC CUACCAUUAU AGCAUUUCUA UGUUGUAUAC GGCGGGCGGC UGCCGAAACG ACGUUUGACU CGCUGUCUCA UCUAUGGAGU CACAAUUACA CUUUGUUCUG GUUGCAACUG UUAGUGCCCG UAGCGGGCAU GAUUGUGCUG UGCUCGGUCU GCAAAUGUAU GUUUUCAUGC UGCAAACAAA UUUGUUUUUU AGCUGUGCUG GGUGCGAGUG UGGCAGCGGC UCGUGCCUAC GAACACACCG CUGUCAUGCC AAACAAAGUG GGGUUCCCGU AUAGGGCACU GGUCGAGAGA CCAGGUUACG CCCCACUACC UUUAGAGUUC ACAGUACUUA ACAGUUCGCU CUUACCAUCG UUAGAACUAC AGUACACCAC CUGUGAAUAC AACACGGUAG UGCCCUCUCC GUAUGUGAAG UGCUGCGGUA CAGCAGAAUG UGUGCAGAAG AACGAGGCCG AUUACCACUG CCGUACGUUU AGC

Products

Productpolyprotein
Descriptionpolyprotein
AIVLGGANEG ERTALSVVTW NKNTVVKVTP EETVEWSALT LLCILGNVTF PCDSPPCAPC CYENNPENTL KMLELNADRP GYDELLQAAL RCNGRRGKRS VASSLLTYRT TQPYVARCDS CGIKPCNSPI AIENIQSMAS DGTIRIQVSA HLKLNKAQVY DDKKISYMYA SNIEEANLYT LYVRTTHKCQ LLDSGGYFII AKCPEGNELE VGFTGKYPHS CRTTFSHKHR FLGRERTRKS TIGGKQVACT TCAAVDNREQ LPVHMPPDIP DDELLTSSAG KPVIKIRPTM KTRYHCQCKE GDKDAVVTTQ TTVEGCTEYH CKTWISQHTK WQYNSRFVPR AEEKEPKAYI TVPFAVVNTT CYLPQAAEPV TKFEHRRLII TVSSPHESLL TVRSLGDRSI RYHHWHSGTT TLNFTLPRSG LEYRWGNNEP VRVWGQHSSQ WDPHGLPHSV FLYYLDKHPL LTASVITVTA LLTVIGFALA AWLICSARNK CLTPYALTPN AQVPTIIAFL CCIRRAAAET TFDSLSHLWS HNYTLFWLQL LVPVAGMIVL CSVCKCMFSC CKQICFLAVL GASVAAARAY EHTAVMPNKV GFPYRALVER PGYAPLPLEF TVLNSSLLPS LELQYTTCEY NTVVPSPYVK CCGTAECVQK NEADYHCRTF
ProductTF
Descriptiontransframe mature peptide
Modifications1701..1701:ribosomal_frameshift
ETTFDSLSHL WSHNYTLFWL QLLVPVAGMI VLCSVCKCMF SCCKQICFLS CAGCECGSGS CLRTHRCHAK QSGVPV

Publication