Recode v. 2.0 / Database of translational recoding events.

 

Details for "r201054"

Accession numberr201054 [export]
Locus nameTF
Descriptionviral protein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismWhataroa virus [details]

Sequence

GenBank IDsAF339479
Sequencess-rna of 4683 nucleotides [sequence]
OrganisationStemloop (1) [see structure]

Recoding event

Event type-1 Frameshifting (position: 3,007)
UUCAAAUUUG GAUCGAUGAU GAAAUCUGGA AUGUUCCUCA CCCUGUUUGU CAACACUGUG CUGAAUGUUG UAAUCGCCAG CAGGGUCCUA GAGCAUAGAC UGAAAGAGUC GCGAUGCGCC GCAUUCAUCG GUGAUGACAA CAUAAUACAC GGCGUAGUGU CUGACAAGGA AAUGGCAGAA AGAUGCGCUA CCUGGCUUAA CAUGGAAGUG AAGAUCAUCG ACGCCGUCAU AGGCAUCAGA CCUCCAUAUU UUUGUGGUGG AUUCAUCCUU CAAGAUGAGA CGACAUUAAC CACAUGUCGC GUCGCCGAUC CGCUUAAGAG GCUCUUUAAA CUAGGUAAAC CACUACCCGC GGAGGACACG CAAGAUGAAG ACAGAAGACG UGCCCUUAUG GACGAAACCA AAGCAUGGUU CCGGGUAGGA AUUAGGAACA CUCUCGCAGU UGCCGUAUCG ACCAGGUACG AGGUAGAAGA UAUUACACCC GUUCUAUACG CGCUUAGAAC AUUCGCUCAA AGCAAAAAGG CCUUCCAGAC UAUACGAGGA GAAAUAAGAC AGCUCUACGG CGGUCCUAAA UAGUCAGUGC AUUACACAUU UUUAUCUGAC UAAAACAGUA CUGCAAACUG ACAUGAACAG ACCAUUUUUC CAAAACUUUG GCCGCCGCCC CUUCCCUGCA CCCUCCAUCG CGUGGAGGCC CAGGAGAAGG AGGUCAGCGG CCCCCGCAUU CCAAGCGCCU CGCUUCGGCU UGGCAAACCA AAUUCAGCAG CUGACAUCAG CAGUCAGCGC UUUAGUUAUU GGACAAUCUG CCAGAACUCA ACCGCCUAGA GCCAGACAAC AACCGAGAAG ACCACCACCU AAGAAGAAGC AGCCGCCACC ACCGAAGAAA GAGAAGCCGA CCAAGAAGCA ACCGAAGAAG CCCACUAAAC CGAAACCCGG CAAACGACAG CGAAUGGUCC UCAAACUUGA AGCCGACAGA CUAUUUGACG UCAAGAAUGA ACAAGGAGAC GUCGUCGGCC AUGCCCUCGC UAUGGAAGGC AAAGUAAUGA AGCCAUUGCA UGUGAAAGGA ACCAUAGACC ACCCCGUACU GUCAAAGCUG AAGUUCACCA AAUCGUCAGC AUACGACAUG GAGUUCGCCC CGCUACCUGU UAACAUGAAA AGCGAAGCAU UUAACUACAC CAGCGAGCAC CCGGAAGGAU UCUACAACUG GCACCAUGGA GCAGUGCAAU AUAGCGGCGG AAGAUUUACU GUCCCUCGAG GCGUAGGUGG AAAGGGAGAU AGCGGACGCC CAAUUAUGGA CAACACAGGC AAAGUUGUAG CCAUCGUUCU CGGCGGAGCA GAUGAAGGAG CCAGAACGGC UCUAUCUGUU GUCACGUGGA AUGCUAAAGG UAAGACGAUC AAGACUACCC CCGAAGGCAC UGAAGAGUGG UCAGCAGCAG CCGCCAUCAC CACUCUUUGC CUCAUCGGAA ACAUGACAUU UCCGUGUGAU CGACCGCCGA CUUGCUACAA CGUGAACCCU GCCACCACUC UAGACAUACU AGAGCAGAAC GUCGACCACC CACUCUAUGA CACACUCCUG ACAUCCAUUA CCCGCUGCAG UUCUAGAAGA CAUAAACGAA GCAUCACAGA CGACUUUACU CUGACCAGCC CAUACCUAGG CACCUGCUCA UACUGCCAUC ACACCGAACC CUGUUUCAGU CCUAUUAAGA UAGAGCAGGU AUGGGAUGAC GCAGACGACG GCACCAUUCG AAUCCAGACA UCAGCACAAU UCGGUUACAA CCAGAAUGGA GCCGCAGACA ACACUAAGUU CAGGUAUAUG UCCCACGAGC AAGACCAUAC CGUAAAGGAG GGAUCCAUGG ACGACAUCCA GAUCCGUACA UCCGGACCGU GUCUGCGACU CAACUUUAAA GGGUACUUCC UUUUAGCUAA GUGCCCUCCA GGAGACAGCG UCACAGUGAG UGUAGCCAGC AGUUCAUCAG CAAUCUCGUG CACCCUUGCU CGAAAAAUUA AGCAGAAGGU CGUUGGUCGA GAAAAAUAUG ACAUGCCGCC UGCCCACGGG CGUAACAUCC CGUGCUUGGU GUACGACCGA CUGAAAGACA CGUCGGCAGG UUAUAUCACU AUGCACAGAC CAGGCCCGCA CGCCUACACC UCCUACCUUG AAUUGGCAUC GAAUAAGGUA UAUGCCAAAC CGCCCUCUGG CAAGAACAUC GCAUACGAGU GUAAAUGCGG CGAAUACAAA ACCGCUACAG UCAGCACCCG UACUGAGAUU CCUGGAUGCA CUGCUAUUAA ACAGUGCAUA GCAUAUAAGA GCGAUCAGAC AAAAUGGGUG UUCAACUCAC CAGACCUAAU CAGACACGCU GAUCACACCG CCAAGGGUAA GCUGCAUUUA CCGUUUAAAC UGACGCCAGG CCAAUGCCUU GUGCCACUGG CCCACGAGCC UUCCGUGGUG UACAGUUUCA AACAAAUCAG CCUCCAGCUA GACACUGACC ACCCGACAUU GCUGUCCACU AGACAGCUGG GAAGUGACCC UCACCCCACA UCAGAAUGGA UUACAGGAAA AGCCACCAGG AACUUCACCG UUACCAGAGA AGGCUUUGAA UACACGUGGG GCAACCAUGA CCCCGUAAGA GUGUGGGCCC AAGAAUCAGC ACCAGGCGAC CCACAUGGUU GGCCACAUGA GAUUAUCCAG CACUAUUACC ACCGGCACCC UAUCCACACC GUUUUGAUCA CAACCGCAUC CCUUAUUGCA GUAAUGGCAG GCAUCAUCAC CGUAGCCAUU UUGUUUUGCA AAGCACGUAG GGACUGCUUG ACCCCAUAUG CGCUGGCUCC UAAUGCAGUC AUUCCAACAU CCGUGGCUCU CCUGUGCUGC AUUAGACCCA CCAAUGCUGA AAGUUUCACU GAGACCAUGU CGUACCUUUG GGGGAAUAGC CAGCCUUUCU UUUGGGUACA GCUCUUGAUC CCAUUGGCUG CCCUUAUUCU UGCAGCGCGU UGCUGCUCAU GCUGCAUUCC UUUUUUAUUG GUUGCUGGCG UCUACCUCUC GAAGGCAGAC GCCUACGAAC AUGCGACCAC UGUUCCCAAC GUGCCUCAAA UACCGUAUAA GGCCCUCGUA GAACGCGCUG GAUAUGCGCC UCUUAACCUU GAAAUCACAG UGGUGUCAUC UGUCAUUAUA CCAUCAGUCC AACAGGAGUA CAUUACGUGU AAGUACACCA CUGUGGUUCC GUCGCCGCAG GUGAAGUGCU GCGGUGCACU UGAAUGCAAA CCAUCGGCAC UAGCAGACUA CAACUGCAAA ACUUUUGGAG GCGUUUACCC CUUCAUGUGG GGAGGAGCGC AAUGCUUUUG UGACACUGAA AACACCCAGA UGAGUGAAGC CUACGUAGAG AGGUCAUCAG ACUGUGCUGU UGAUCAUGCG CAAGCUCUCA AAGUACACAC AUCCUCUAUG AAGGUCGGCC UGAAGAUCAC CUAUGGAAAC ACGACAGGGA UGCUCGACGU GUUUGUAAAC GGAGUUACGC CCGGCACAUC AAAAGAUCUU AAAGUAAUUG CCGGCCCCAU UUCAGCAGCG UUCUCACCGU UUGACUCCAA GGUGGUAGUC UAUAAGGGCA UGGUGUACAA UUACGACUUU CCAGAGUUUG GGGCUAUGAA ACCGGGAGUG UUUGGAGACA UCCAAGCAUC UUCCCCGACC AGCAACGAUC UCGUGGCCAA UACAGACAUC CGCCUCCUUC GACCGAUAGC GAGGAACGUA CAUGUUCCCU ACACCCAGGC GGCCUCCGGC UUCGAGAUGU GGAAGAAUAA CUCCGGUAGA CCACUGCAGG AGACGGCCCC UUUUGGAUGC AAAGUACAGA CCAACCCACU ACGUGCCUCU GACUGCGCAU AUGGAAACAU CCCCAUUUCG CUGGACAUCC CGAAUGCGGC CUUCAUGCGC AUAUCGGAUG CACCCCUGAU AUCAGCGGCC ACAUGCACAG UGAGUGAGUG CAUCUACUCA GCAGAUUACG GCGGUAUGGC CUCCAUACAA UAUACGUCAG AUCGAGAGGG CCAAUGCCCG GUCCACUCGC ACUCCAGUAC CGCAUCCCUU CAGGAAUCUA CAGUUCAUGU AGUGCAGUCA GGCACUGUCA CAGUCCACUU CAGUACCGCC AGCCCGCAAG CCAAUUUCGU CAUUUCGCUG UGCGGUAAGA AAACCACUUG CCAUGCAGAG UGUAAACCAC CUGCUGACCA CAUUGUCAAG ACGCCACACA AGAACGACCA GGAGUUUCGA UCAGCCGUCU CUACUACAUC CUGGAGCUGG CUGUUCGCCC UUUUUGGAGG AGCGUCCUCA CUUAUCUUUA UAGGCAUCCU CAUAUUUAUG UGUAGCAUGC UUAUGACUAA CACACGCAGA UAACCGCAAU CCACCCUGAC CAUACCAGUG UAAACUCGAU GUAUUACCGA GGAACUGUUG CGCCUAUAGC AACGGGCUGG UACAUUAGAU CCCCGUUAGC ACGGGCACAU UAUCACAUAA CGUAUAAACU CGAUGUACUC CCGAGGACGC ACAACGCCUA UAGUUGUGCG ACGUUAUAAU CAUCAUUAUA AACUCUGGCG CGGAAACUCA AUGUAUUUCU GAGGAAGCGU GGUGCAUAAU GCCACGCAGC GCCAACAUAU AGCAUUUAAU CAUUUUAUAA UUUUUCUUUU UAUAAUCCAA CAAAAUUUUG UUUUUAACAU UUC

Products

Productpolyprotein
Descriptionpolyprotein
MNRPFFQNFG RRPFPAPSIA WRPRRRRSAA PAFQAPRFGL ANQIQQLTSA VSALVIGQSA RTQPPRARQQ PRRPPPKKKQ PPPPKKEKPT KKQPKKPTKP KPGKRQRMVL KLEADRLFDV KNEQGDVVGH ALAMEGKVMK PLHVKGTIDH PVLSKLKFTK SSAYDMEFAP LPVNMKSEAF NYTSEHPEGF YNWHHGAVQY SGGRFTVPRG VGGKGDSGRP IMDNTGKVVA IVLGGADEGA RTALSVVTWN AKGKTIKTTP EGTEEWSAAA AITTLCLIGN MTFPCDRPPT CYNVNPATTL DILEQNVDHP LYDTLLTSIT RCSSRRHKRS ITDDFTLTSP YLGTCSYCHH TEPCFSPIKI EQVWDDADDG TIRIQTSAQF GYNQNGAADN TKFRYMSHEQ DHTVKEGSMD DIQIRTSGPC LRLNFKGYFL LAKCPPGDSV TVSVASSSSA ISCTLARKIK QKVVGREKYD MPPAHGRNIP CLVYDRLKDT SAGYITMHRP GPHAYTSYLE LASNKVYAKP PSGKNIAYEC KCGEYKTATV STRTEIPGCT AIKQCIAYKS DQTKWVFNSP DLIRHADHTA KGKLHLPFKL TPGQCLVPLA HEPSVVYSFK QISLQLDTDH PTLLSTRQLG SDPHPTSEWI TGKATRNFTV TREGFEYTWG NHDPVRVWAQ ESAPGDPHGW PHEIIQHYYH RHPIHTVLIT TASLIAVMAG IITVAILFCK ARRDCLTPYA LAPNAVIPTS VALLCCIRPT NAESFTETMS YLWGNSQPFF WVQLLIPLAA LILAARCCSC CIPFLLVAGV YLSKADAYEH ATTVPNVPQI PYKALVERAG YAPLNLEITV VSSVIIPSVQ QEYITCKYTT VVPSPQVKCC GALECKPSAL ADYNCKTFGG VYPFMWGGAQ CFCDTENTQM SEAYVERSSD CAVDHAQALK VHTSSMKVGL KITYGNTTGM LDVFVNGVTP GTSKDLKVIA GPISAAFSPF DSKVVVYKGM VYNYDFPEFG AMKPGVFGDI QASSPTSNDL VANTDIRLLR PIARNVHVPY TQAASGFEMW KNNSGRPLQE TAPFGCKVQT NPLRASDCAY GNIPISLDIP NAAFMRISDA PLISAATCTV SECIYSADYG GMASIQYTSD REGQCPVHSH SSTASLQEST VHVVQSGTVT VHFSTASPQA NFVISLCGKK TTCHAECKPP ADHIVKTPHK NDQEFRSAVS TTSWSWLFAL FGGASSLIFI GILIFMCSML MTNTRR
ProductTF
Descriptiontransframe mature peptide
Modifications3007..3007:ribosomal_frameshift
ESFTETMSYL WGNSQPFFWV QLLIPLAALI LAARCCSCCI PFLIGCWRLP LEGRRLRTCD HCSQRASNTV

Publication