Recode v. 2.0 / Database of translational recoding events.

 

Details for "r201055"

Accession numberr201055 [export]
Locus nameTF
Descriptionviral protein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismNdumu virus [details]

Sequence

GenBank IDsAF339487
Sequencess-rna of 4886 nucleotides [sequence]
OrganisationPseudoknot (1) [see structure]

Recoding event

Event type-1 Frameshifting (position: 2,962)
UUUAAGUUUG GGGCCAUGAU GAAGUCCGGA AUGUUUCUGA CGUUAUUUGU UAACACGCUG CUUAACGUCG UUAUAGCUAG UCGCGUCCUA GAAUCCAAAU UGACGGGGUC GCGAUGUGCC GCCUUCAUUG GGGACGAUAA CAUCGUGCAU GGCGUGGUCU CAGAUAAGUU GAUGGCAGAA AGGUGUGCCA CCUGGAUGAA CAUGGAGGUG AAAAUUAUCG ACGCAGUCAU CGGAGAAAAA CACCCGUAUU UCUGCGGCGG GUUCAUCCUA CAGGAUGCUG UGACCGGCAC GGCGUGCCGA GUAUCCGACC CAUUGAAGAG ACUGUUUAAG UUGGGUAAAC CACUGCCUGC GGACGAUGAG CAGGAUGAGG ACCGCAGACG AGCACUCCGU GACGAGGUGA UGAGAUGGUU UAGGGUAGGU CUGCGGUCUG AGGUGUGUGC UGCAGUUUAU UCCAGGUACG GCGUGCAGGG GCUGGAUGUU GCUUUGAUGG CUAUGGCAAC CCUGUCGAAG ACUAGGAAGC ACUUCGACAU GAUUAGGGGA CCCGUAAGGG UUCUCUACGG UGGUCCUAAA UUGUAGCAGC CACAGAGUGA CGCUACUACA CUGUGCCUGC UACGCCAUGG AUUUCUUCAG AGGACCUUUC GCUAUGCCGU UCCGCCAGCC UUACCGCCGC CCGUUUGCAA UGCCGCCACG CCCACGACCU AGGUUUAACC CGGUUGUGGA ACAAGGUAGG CAAAUUCAAC AACUAAUACA GGCGGUAGGU AGUCUGGCGC UUGCGCAAAG ACCGCGCGCA CAGCCGAGCA GACCGCCGCG UCAGAACCGA AGAAGAAAGC CACAACAACC AACGCAGUCU CAGCAAAAGA GCAAGAAGCA GAAACCAAAG AGCAAUCAGA AGAAUGCUCA AGUGCAAACA AAGAAACAGG AUAAGACAAA GAAGAAGCCG GGUAAAAGGG AAAGGAAGUG UAUGAAAAUA GAGAGUGAUU GUAUCUUUGA AGUGAAGUUA GAUGGAGAGG UGACGGGAUA UGCAUGUUUG GUUGGGGAUA AAGUGAUGAA ACCAGCCCAC GUAAAAGGGG UUAUCCAAAA UGAUGAACUU GCUAAACUCA GCUUCAAGAA AUCUAGCAAG UAUGACCUAG AGUGUGCACA GAUACCGGUG AAGAUGCGUU CCGAUGCAUC CAAGUACACU CACGAGAAGC CUGAGGGUCA UUACAAUUGG CACCACGGAG CAGUCCAGUA UACUAACGGA AGGUUCACCA UUCCGACUGG AGCAGGCAAG CCAGGAGAUA GCGGUAGACC GAUCUUCGAU AACAAGGGAA GAGUCGUCGC AAUAGUGCUG GGAGGGGCCA ACGAAGGAGC CCGAACAGCU CUAUCAGUGG UCACGUGGAA CAAAGACAUG GUGACCAGGG UUACACCAGA GGGAUCCGUC GAAUGGUCCG CGGCGGCCAC CUGCGUUCUU GGUGCUGCCA UCUUUUCCUG CCUGUCUCCG CCUGUGUGCU AUGAUGAAGA ACCGGAAAAA ACUCUAACGA UGCUGAGUAU GAACGUGGAU AACCCAGACU AUUACUCGUU GUUUGAAGCC GCGCUUGACU GCCGCUCUCG CAGGCACCGC AGAGCUGCUC AGCACUUCAA CGAGUAUAAG GUCACCCAGC CUUACAUUGC UUACUGUCCG GACUGUGGUA AUGGAGAGUC AUGCCAGUCU CCGGUGGCUA UUGAAAGGAU UCGCAAUGAA GCUACAGAUG GGACCCUGAA GGUGCAAUUU GCCUUGCAGG UGGGGAUUAA GAAGGAUCAC AGCACUGCAC CUACUUACCU AAGGUACAUG GAGGGACACG AGGUGAAGGA UGCACUGAAC AACCUCAGAG UGUAUACUUC GGCCCAAUGU GAGGUGACUG CGACUAUGGG UCAUUUCGCU CUGGCUCGGU GUCCUCCUGG GGACAGCCUG AGUGUUACGU UCAUGGACGC CUCCAAGAAA AACAGGAUGU GUAGGGUCCC AUUUGUACAU AAACUUCCCU UCUUAGGCAG AGAGAAAAAC AGUGCCCGCC GCUACCACGG CAAAGAUGUU ACGUGUACCA CCUAUGCCAG ACGGACAGAU GUCACAGAUG AGAACCUGGA GAUGCAUGUG CCACCGCACA UACCGGACGC GACGCUUGUU AAAGUACAAU UAAAUAAUGU UACAAUCACA CCGCCGUCGG GAGCGACGGU GAGGUAUAAU UGUUCAUGCA AAGACGGUAA CAGGCAAUCA GAGACCAGCC GUGAAGUCGU GUUGUCCGGG UGCGCUGAAG CAAAGUGCCA CGCCGCGGUG GUGGAUGGGA AGGUGUGGCA GUAUAGCUCU AGAUUCGUGC CUAGGCACGA AAAGACAGAG CUAAAGGGUA AGGUACACGU UCCUUUCCCU UUGACUAACA CCACAUGUAG AGUAAGUGUA GCAACUAAGC CAAUAGAAAA ACAUGCUAGA GGAUUGCUUA CGCUAGUGUU GCAUCCCGAA UACCCGACCC UGCUUAGCUA UAGAUAUUUA GGAGCAGAAC CACGCCCGGU UAACAGAUGG AUAUCAGAGC CAACGGAGGU GCAGAUUCCC GUGAGCAAAG AGGGGAUAGA AUAUAGAUGG GGCAACAAUG AACCUGAAAG AAGGUGGGCG CAGCACACGA CCACCGGAUC CGCGCAUGGA CACCCACACG AGAUAAUUAC GUACUACUAC CACUCACACC CGACAACCAC AGUGGUGGCG UGCGUGACGG CGGCUGCCGU GACUCUUGUA AUGAUGUGCG UGGGGUGCAG UGCUUGUAGA GUCGCUAGAA CACGAUGCUU GACUCCAUAU GUACUGGCGC CGGGAUCUCG CGUCCCUCUG AUUCUGGGGC UGUUGUGCUG CGCCAAGGGU GCAAGGGCCG AACAAUACGA GCCGACACCG UGGUGGGUUU GGGCACCCGC UGCGUUGGUA CUCCUAUGUG GAUUGAGGAA GUGUCUAUGC UUGACUUUUU UAGUGAUACU AGGCCUGGCC AGCCCACCGA CCCAGGCCUA CGAGCACACG GCUGUGAUGU CGAAUCAGGU GGGAGUACCC UACAAGGCCC UGAUCAACAA GCCCGGAUUU GCGCCCAUGA UUCUGCAAAU AGAAGUGCUC CAGUCUAGUC UGAUACCAUC UUUGGAACUA GAUUAUAUCA CAUGUGAGUA CAAGACUGUA GUGCCUUCCC CUUUCGUUAA GUGCUGCGGA UCUGUAGAAU GCACGGGACG GAGUAUGCCC GAUUACCAGU GUAGGGUUGA UUCUGGAGUG UACCCGUACA UGUGGGGAGG GGCAUACUGC UUUUGCUCUA GUGAGAACAC UCAGAUGAGU GAAGCCUACG UAGAACGUGC AGAAGUGUGU AAGCACGAAC ACGCAUUGGC UUACAAAACA CAGACAGCGU CACUUACAGC CACCCUAAAA GUGACGUUGG GAAACAUCAC UCAAGGAGCU AAGGCUUACG UAAAUGGGGA GACACCGUUC CAAAUUGGCC AGGCUAAAUU UGUUUUAGGA CCGAUAUCCG CGGCGUGGUC GCCAUUUAAC CCUAAGAUAG UAGUAUAUAA GGAUGAUGUA UAUAAUUAUG AUUUUCCGGC CUACGGUGCC GGGCAGCCAG GCCGUUUUGG GGAUAUCCAG AGUAGGACAG UAGAUAGUAA GGACCUGUAU GCAAGGACAC ACCUAAGGCU AGACAGACCG GCAUCUGGUA ACAUACAUGU ACCAUAUACC CAGAUACCAU CGGGGUUUAA AUAUUGGAUG CAAGAAAAAG GGGAGCCUCU GAACAGGCAA GCAGCAUUUG GCUGUGUGGU AAAGACGAAC CCAGUGAGAG CAGAUAACUG CGCUUAUGGC AACAUUCCCA UUAGCGUGGA CAUCCCGGAU GCGAUGUUCA CCAGAGUAGU UGAUAUACCA GCGGUAUCCC AUCUGCAAUG CAUAGAUGUC AGCUGCGCCC ACUCGGCAGG AUUUGGCGGA GUGGCGAAGC UGAGGUUUAU GGCAGACCGC ACAGGGAAGU GUGCCAUCCA CACGGCAUCG AAAAUAGUUG CUAUUCAGGA GGCAACGGUG GACUUACCCG AGAUAGCAGU GGGCGCAGGA GGUGGAACAG CAGAAAUAAC GUUCCACUAC UCAACAGCCU UGGCAUCGCC GUCCUUUGAC GUCCAACUGU GUUCUGCACA CGUGACGUGC GAUACCAAGU GCGAACCGCC GAAGGAUCAC AUUGUCCCUU UCGCGGCUCA GCACAUGUCG AACGACAUGC CUAACCUGUC CGCCACUGCG AUGAAUUGGG UGACCGGAUU GGGAACGAGU AUUGGGACAU UUGUCUUCUU GUUCCUGGGG AUACUACUGG UGGUCACCAU AAUUAGAUGU UUUACCAGAU AACUUUGGUG UGGUCCCAGC AUGCUGAGGU AUUAUAGAUA ACUUAGUUAG GUAUUAUAGG UAACUUAGGU GUAAGCAGAA AAAUGGAAAA CCGAAUAAAA AGUUAGAGUA AGUAGUGUAA AUUAGAAAAU AAGUUUUGAU AGUGGUAGUU AGGUGUAAGC AGAAAACAGA AAAACGAAUA AAAAGCUAGA GUAAGUAGUU AGCUGCAUAU AGAGGUAGUA UAGGUGUAAG CAGAAAAUGG AAAACCAGUA AAAAGUUAGA GUAAGUAGUA GAGAAUAAGU UUUGCUAUGC AUUAGAUAGG UUGCUUUGAU UUUAUAGAAA AUAGUAGAUG CUUAUAGAGG UAGUAUAGGU UUAAGCAGAA AAAUACAGAA AAAUCUAAAG AUAUGCGACG AGCAGACCGU CGUGAGCGCC AAUUGGAUCG GCGCAACAGG GUUAUUGGAC UGCCCUGCAU GAACCCUUAU UGGACGAUGG GUUCUUCGUC UGCAAAAUUC AUAUUUAAAA UUUUGUUUUU AUUUUUUGAU UCGAUCAAUU GGUUUUUAAU AUUUCC

Products

Productpolyprotein
Descriptionpolyprotein
MDFFRGPFAM PFRQPYRRPF AMPPRPRPRF NPVVEQGRQI QQLIQAVGSL ALAQRPRAQP SRPPRQNRRR KPQQPTQSQQ KSKKQKPKSN QKNAQVQTKK QDKTKKKPGK RERKCMKIES DCIFEVKLDG EVTGYACLVG DKVMKPAHVK GVIQNDELAK LSFKKSSKYD LECAQIPVKM RSDASKYTHE KPEGHYNWHH GAVQYTNGRF TIPTGAGKPG DSGRPIFDNK GRVVAIVLGG ANEGARTALS VVTWNKDMVT RVTPEGSVEW SAAATCVLGA AIFSCLSPPV CYDEEPEKTL TMLSMNVDNP DYYSLFEAAL DCRSRRHRRA AQHFNEYKVT QPYIAYCPDC GNGESCQSPV AIERIRNEAT DGTLKVQFAL QVGIKKDHST APTYLRYMEG HEVKDALNNL RVYTSAQCEV TATMGHFALA RCPPGDSLSV TFMDASKKNR MCRVPFVHKL PFLGREKNSA RRYHGKDVTC TTYARRTDVT DENLEMHVPP HIPDATLVKV QLNNVTITPP SGATVRYNCS CKDGNRQSET SREVVLSGCA EAKCHAAVVD GKVWQYSSRF VPRHEKTELK GKVHVPFPLT NTTCRVSVAT KPIEKHARGL LTLVLHPEYP TLLSYRYLGA EPRPVNRWIS EPTEVQIPVS KEGIEYRWGN NEPERRWAQH TTTGSAHGHP HEIITYYYHS HPTTTVVACV TAAAVTLVMM CVGCSACRVA RTRCLTPYVL APGSRVPLIL GLLCCAKGAR AEQYEPTPWW VWAPAALVLL CGLRKCLCLT FLVILGLASP PTQAYEHTAV MSNQVGVPYK ALINKPGFAP MILQIEVLQS SLIPSLELDY ITCEYKTVVP SPFVKCCGSV ECTGRSMPDY QCRVDSGVYP YMWGGAYCFC SSENTQMSEA YVERAEVCKH EHALAYKTQT ASLTATLKVT LGNITQGAKA YVNGETPFQI GQAKFVLGPI SAAWSPFNPK IVVYKDDVYN YDFPAYGAGQ PGRFGDIQSR TVDSKDLYAR THLRLDRPAS GNIHVPYTQI PSGFKYWMQE KGEPLNRQAA FGCVVKTNPV RADNCAYGNI PISVDIPDAM FTRVVDIPAV SHLQCIDVSC AHSAGFGGVA KLRFMADRTG KCAIHTASKI VAIQEATVDL PEIAVGAGGG TAEITFHYST ALASPSFDVQ LCSAHVTCDT KCEPPKDHIV PFAAQHMSND MPNLSATAMN WVTGLGTSIG TFVFLFLGIL LVVTIIRCFT R
ProductTF
Descriptiontransframe mature peptide
Modifications2962..2962:ribosomal_frameshift
EQYEPTPWWV WAPAALVLLC GLRKCLCLTF LSDTRPGQPT DPGLRAHGCD VESGGSTLQG PDQQARICAH DSANRSAPV

Publication