Recode v. 2.0 / Database of translational recoding events.
Details for "r201079"
| Accession number | r201079 [export] |
| Locus name | polyprotein-RdRp |
| Description | polyprotein-RdRp |
| Recode status | Reviewed |
Organism
| Genomic class | Viral Genome (Virus) |
| Organism | Grapevine rootstock stem lesion associated virus [details] |
Sequence
| GenBank IDs | NC_004724 |
| Sequence | ss-rna of 16527 nucleotides [sequence] |
| Organisation | Sequence (1)
|
Recoding event
| Event type | Unknown (position: 0) |
| Description | +1 (or other) ribosomal shift into +1 reading frame |
GUAUUCUGUU GGCUUUCACC UGUGUUUGUG CCUCGGUUCA ACCACAACCU GAAAGUUUCA GUUCCCAGGA
GUAUCGGUUU UUCCUCAGAA ACCUUACUUC UUCAGAAUGU CUAGCCUUGC UAUUUCUGCU CUUCCCUCCG
CGGUUGCUCA AUUGAGUUUU GGUCAGCCUG CUGCCACGGU UGCCAAGUCA UUUUACAUGA CUUCCCUUCC
GUCCCUUCAG ACUUGCUUCA CUCAGUGCGA GUUUUCCUCU CUUUUUAUUU GUUUGGCUUC UUUCCAAAAA
AUAAAAACAU UUCUUUCUUU CCUAAGUUCA GUGCGUGAAC UCGCUCUUUU UUCUGAACUG UCCACGAUUG
GAUUCUGCUG UGAAUUCAUU CGCUUAGGUG UUGGAGAACA UCCUUUGUUU UUUGUUUCCU UCCAGUGCGG
ACCUUUGUCC GUGUGUUUGG GGUGUGUGAA UGGUAUUUUU GCCGUUCUCA ACAUUUCUUU UCCCUUUUUA
GACGUCGCUU CGUUGUUGAU GGACGUUGGU GAUGUGGUCA CUCCGACCAA GGUAAGAAUU UCCAAACGUG
CGAAGAAGUU GAAUAAGCGC GCUUUUUCAA UAGCCCGUGC UGCUGCGCGU AUUAGGCGUU CCAAGGUUGG
AAAUAAGGAG GUUCGCAUCU CUCAUGUGCA GCCCCUCCCU GCUGGUUGCU UACGGUUUUC CCAAAACAAA
AACGGAACAG AACUCAUCAU AAUAGGUCGG GACGUAGGUG UUGUGGCGCG CGUAAAAACC GCAGCACCUG
UUGUGCGGCG UCGCGGUGGC GGCGGUCGUG UUCCCCUCAU ACCCCUAGUA GCCGUUUCGC CUUUUGGGGU
GAGGUACCGU UGUUACGCGC CUUCAUGUGG CGCGAUCGCG UGUUUCAAGA AUAAGCUCGC UAGCCGUGUU
GCCGCUAACG AUAGUCGCGC CGAGAAGCUU CUUUCAGCUC GGCGCCGUAA AUUGCAGCAA CAAAAUUUCA
ACAGUCGUGU GGCGAAGAAA GCGCGUGACG UAACUGCGUC GCGCGUCGAU AUGGCAGAAG GUGAAGUCAC
ACCACCGCGC CACAUCUUUU UUGGUAGUUU UUCGGAACCC UUUCCAAUAC CUUCUUCUUC CGGAAUGGCG
AGAUCGGUGC UUCGUGAAGA ACCCGCUAUC GUUACGUGUG GCGCUAGCGC GCCCGCGAUA AAAGAAACUC
CGCGGGUGAG UGUGAAAAAG GCGGAUUUUU CACCGGCGGC GCCUGUUCCG CGGGAGGCUC UUACCCCAAG
AGUCGCUAAA CGCGGCGAAG CGAUCGUCAU AUCGGGCGUG GUGCACGAAG UUUUGAAUAA GAUUAGAGAG
GGCGUUUUGC GCUUUCGCGU GGGCGGUGAU AUGCGUUUCU CUAGGUUCUU CUCAUCAACC CACGGUUGCA
AAAUUGUUGC CAACGUGCGC ACCAACACUU CCGUGUGGUU GAACUGCACU AAGGUCAAUG GUGAAAAAUU
UUCGGUGGCG AUCCCUUGUU CGGUGGAUUA UGUAGCGAUG CUGCGUUACG UGAGUGGCGG GAAGUUCCCG
CUUGUCCUGA UGAGCAGGGA AUGUUACCCU GAUGGGCUAU GUUACAUGGC UCACAUGAGG UAUCUGUGUG
CUUUCUUUUG CCAACCUUUC AGAGAAUCAG ACUAUCCUCU GGGUUCGUGG CCAUCGGUGG CGCGAUUGAA
GGCGUUGGUU UUGAAGCGCU UUGGUGACGA GGCGCUGAAU AUAGGCGUUC GCGGCUACUA UGUCUCUCGU
AGGGCUUUUC AUUGCGACUA CGAUUCUAAA UACGCGAGAA GCUUGAUGAG GCUUGCGGGG UAUGUCGGGG
GAGACGAGGU UAUACAUUCA ACGUUGGCGU CCACGGUCGU GUUAAAACCG GGUGAACGCG CACGCGAUCG
UCCGAAAAGC AUAAGUUUUG GAUCGUUUUG CUGCGAGUUG CGUUACGUCG AAUCCGUCAA UCCUGACGCC
CCUCGCUUGC GAAGUGAGAA GGUUCUGAGG AAAGUGGAGC CGCGCAAUGG GGUUCGCACG GAAAGCGCUG
ACGUUGGUUC GAACGUCACA CGGAAGCGCG ACGCCCGCAU CGAUAGAAAG UUUUCGCAUC UUUUAGCGGG
AAGUGUUAAU AAAGUGAAGA AACGAAUCGC GGCCGGGGUG UUGCGAUAUC GAGUCGGCGG UGACAUGGAC
UUUCAUAACU CCUUUCUUAC CCAAGCGGGC UACCACUUGC UAGUGCGGCG UAAGACGAGC AGCAGUGUUU
GCGUGGAACU UUCGACGCCG GACGGUAGGC UCUUGCGCCG CGACGUCAUA CCCUGCUCAA GAGAUUACGC
UGCGAUGUUG UCGUUUGCCG CAGGAGGUCG UUUCCCGUUG GUUUUAAUGA CGAGGGAUAA AUACAAGAAC
GGUUACUGUU ACUUGGCUCA CUGUAGGUAC GCGAGCGCUU UUCUUCUGAA GGGUUUUCAU CCUGCGGUUU
UUGACAUUGG CGCUAACCCG ACGGCGGCGA AGCUUAGAUC GCGCAUGGUU UCGGUCCUAG GGGACAGAAG
UCUGAGUUUG AAUUUAUACG GGUCUUUCAC GUCCCGCGGU AUUUUUCACU GUGAUUACGA CGCGGCUUAU
GUGAAAGAUU UAAGAUUCAU GUCAGCGAUC GUGGCUGGUA AGGAGGAAAU GGGAGAGGUG GUUGCUUCUG
AUAUAACUCC GGCGAUGAAA CAGAAGACUA UCGAAGCUGU UUACGAUAGG UUGUAUGGUA GUAACGAUUC
GUUGUUGAAA UUGAGCAUAG AGAAAGAUCU AAUAGAUUUC AAGAAUGACG UUCAGAGCCU GAAGAAGGAU
AGACCCGUUA UUAGGGUGCC UUUCUACAUG UCUGAAGUCA CUCAGAACUC GCUGACGCGU UUCUAUCCUC
AAUUCGAGCU UAAAUUCUCA CACUCUACGC ACUCUGAUCA UCCCGCGGCG GCCGCUUCGA GGCUGCUAGA
GAACGAAACG UUAGUGCGAU UGUGCGGUCA CAGUGUUUCG GACAUUGGGG GUUGUCCUCU CUUCCAUCUU
AACUCAAAAA CGCAAAGGCG CGUUCACGUG UGCCGACCCG UGUUAGACGG UAAAGACGCG CAGCGUCGAG
UGGUGCGCGA AUUGCAGUAU UCUUCAGUAC GAUCGGGAGA UGAUGAGAAA AUUUUGGAAG GGCCCUCCAA
UGUGGACGUG UGUCACUACC CUCUCGGCGU UUGUGAGCAC GAGAGUAGUA CCAUGAUGAU GGUGCAGGUU
UACGAUGCAU CGCUCUAUGA GAUAUGCAGU GCUAUGAUUA AGAAGAAGGC GCGCAUAACU UACCUCACUA
UGGUCACUCC UGGCGAGUUU CUCGACGGGC GUGAAUGUGU UUACAUGGAA UCGCUAGACU GCGAUAUUGA
GGUUGAUGUG CAUGCGGAUG UUGUGAUGUA UAAGUUCGGU AGUUCGUGCU AUUCGCAUAA GUUAUCGAUC
AUUAAAGAUA UUAUGACCAC GCCGUAUCUU GUGCUCGGGG GCUUUUUAUU UAGUGUGGAG AUGUACGAAA
UCCGAAUGGG CGUGAACUAC UUCAAGAUCA CGAAGUCGGA AGUGUGCCCC AAUAUCUCAU GUUCUAAGCU
GCUGAGAUAC CGCAGGGCUA ACAGCGACGU CGUGAAAGUG AAACUGCCGC GUUUUGAUAA GAAGCGUCGC
AUGUGUUUAC CCGGGUACGA UAUUAUAUAC UUAGAUUCAA AAUUUGUGAG UCGUGUUUUC GACUACGUGG
UGUGUAAUUG UUCCGCGGUG AACUCAAAGA CUUUCGAAUG GGUCUGGAGU UUCAUUAAGU CCAGCAAAUC
GAGAGUGAUU AUUAGUGGGA AGAUCAUUCA UAAAGAUGUC AACCUUGAUC UCAAGUACGU CGAGAGUUUC
GCUGCCGUGA UGCUUGCGUC GGGUGUGCGC AGCAGGUUGG CUUCGGAGUA UCUCGCGAAG AAUCUCAGUC
AUUUUUCGGG AGAUUGCUCC UUUAUCGAAG CGACCUCUUU UGUUCUGCGU GAGGAGAUUA GAAAUAUGAC
CCUUAACUUC AAUGAAUGUC UUCUGCAGUU GGUGAAACGC GUGGCAUUUG CGACUUUAGA CGUAAGUUUC
UUAGAUCUGG AUGCCACUAU GGAAUCAAUC ACAGAUUUCG CCGAAUGCAA AGUAGCUGUG GAUCUUGAAG
AGUUGGGAUG UUUGAGAGCG AAUGCCGAGA AUGAAAAAAU UCGGAACCUC GCUGGCGACU CAAUGGCAGC
GAAAUUGGCU AGCGAGAUAG UGGUCGACAU AGAAGCGAAA CCUGUCGCUA AACACGCAGA ACACCCGAAG
AGUGAAGUGA GUGAAAAGAA GGAGCACGCG AAACCCGGCU UGCGUGGAGG CUCGAAAGCC GGAGUUUUGA
AAGAGUUCCU CGAUUUCGUU CUUUCGUCCG CGUCACGCUU GUUCAGUUGC GUGGCGGAUC AACAACGAAU
UAAGUCGUAC GUCCAUUACC UUGACACCGC UGUAUCGUUC UUAGAUCAGA AUUACGAGAA CCUCUCCUUC
AUUAUGCGCG UUCUAUCGAA AGGUUACUCU UGCAUGUUUU CAUAUCUCGC GAAUCGUGGU AGUCUUGCCA
AUCGCGUGGC GAGCGCGGUG CAAAUCGUUA GAGAAAUUGC UGUGUUAUGC GCUAACGUAA GCGUUUCCAA
GGCCAAAGUA GUGGUCACUU UUUCCGCAGC GGUGUGCGCG AUGAUGUUCA ACAGUUGCGG CUUUUCAGGC
GACGGUCGAG AAUAUAAAUC AUACAUGCAC CGUUACACGC AAGUGUUGUU CGACACCAUU UUCUUUGAAG
AUAGUAGCUA CCUUCCCAUA GAGUUACUCA GUUCCGCAAU AUGCGGCGCU AUCGUCACUC UUUUCUCGUC
AGGAACUUCU GUAAGUCUGA AUGCUUUCCU GCUCCAAAUU ACCAAGAGCU UCUCUUUGGA GCUUAUCGUC
CGGAACGUGG UGCGCGUGAC GCAUUCUUUG AGCACCACGG CGACUGAUGG AGUGAUGCGC AGCGUCUUCU
CUCAAAUAAU CAGUCACCUG CUUGUGGGAA ACACUGGUAA CUUAGCUUAU CAAAUAGCUU UUUUAACCGG
GGUGGUGCCC UUGUUAGUGA AGAAAUGCGU GGGUUUGAUU UUUUCGAUGA GCGAGGACAC GUACUCUGGC
UUUAUCAAGC AUGGGGUUAG UGAAUUUUCG UUCAUCACUA AUAUCUUAAA AUACCUGAGA GGACAGCUGG
UAGACGAAUU GAAAGCGGUA GUUCAAGGAG UUUUUGACUC GAAUAAACAU CUCUUUCGUG AUGUUACUCA
GGAGGCGAUC CGGUCGACCG UUAUGCAGAU ACCAACCGCC GUGGUGGAUG GUUUGAAAUG UGCGGCUAGU
AAAGUGUAUA GCGGAAUAGU CGGUAAAAAG ACGAAUGUUG GGGAAGAAAA AUCCCGUGGC GGUGGAGACG
ACCACGAAGA GUAUUUUUCC UGCGACGAGA GCGAAACUCC GGGUUUAAGG GGCGGAUCCA GAAGCGGUUU
CUCCAUCCUA UUUUUCUUUU CAAGGUUAGU GCGGCGAGCG CGCAUUUUGA UUGGUAGAAU AAAGCAUAGG
UGCUUCUCAA AAAUUUUUGA GAGUAUCUCG UUGAAGAUUC AUGAGCUUAG AACCUUUCUC CUUGGAAAGA
AGCGAAGCGA CGUAGGGGUG UACGAAUUCC UAUCCGAGGA CGUAGCUGAU GCUCUAUCCU CGAUAGAAGA
AUGUGACGAA AUCGAAAAUC UGAUCGGAGA CGGGUUUCGC GAUAUGGCGG AUGACUCUCU CACGGACAUG
AACUACUUCG ACUUCUCAGA CGAAUUUUUA GCCUCCGUUA AUGGCUUACC UUGCGCUGGG UUGCGCGGAG
GCGGUAGGAG GGUGGGAAUG CUCGCCAUUC UGAAUUACGU UUAUAACUCU CUAAGCAUCA UGGCUAGAGC
AGCUUCGAAA AAUUCGACUU UCACAUCUCU AAUCAUUUUU UCGCGCGGAU UGGUUGAUAG AAUCCGCAAC
AUUUUCUCAA AUAAGGAAAG UGUCGUUGAG CUUGUGCGCA AGUACGUUAA AAACUUUUUA AAAAGUCGCA
UGCGCGGUUU GGGUCUAAGA AACGAACAUG UAGUGAAUUC GUUCGGGGAG UUGGUGCCAC UGCUCUUACG
AAACAAGUUG UCUGAAACUU UCAUCUAUCG UGCGGUCCCC AUGUCGAAGU GGUGCUGGAA AGUGUGCUUG
UCAGCUGAGC GGCGGGAAAA GUUUUUCGCG CUCGUGUGCU UAGUCACUCU GGGAUUUCCC UACUUCGCUC
GUUUUUUGGG UGGGGUAGUG UGCGAUAAGC UCUUGUCUUC AUUACGACGU GCGUACGACC GUGUGAUAGU
UUUUCUAAAG GAGCGAUGUG ACGCAGCCAU GAAUGGGUUG CGUUGUUUAU UUCAUUUUGA CGGGAAUGGU
GAUUCCACAU CUGCCGGUUU AAAGGGCGGU GGCUCGCAAA CGUUUCUAUG GGGCUUGUUA UUACGUUUAG
UGCGUUUUGC GCUAUCUUUG GGCUACGCGG GUUGUAAGUG CGUUUUCUCG CACCACGAUC UAUUUUUCUU
AUGCGUCUCC UUAGUUGAAG AGGUGAACAU GAUCGCGAAA AUUCUAGGGU GUUUGUCGUU CUUCUCACGA
CCAAUAUCAU CAGCGCUGGC AUUCGCUCUU UUACAGCCCG AGAGGUUCGU UGAGUACUCU GGAAAGUUGA
GCACGACUUU UUUGUUUUUU CUCAAAAUUU CUCCUCGCGU GCCUCUCAAG AUCAAAGGGU UUUUCGAGUG
GGUGGCCGGU AGUCCUCUAU UGAGGGGCGU UCGGAGAUUC CUUCGCUUGA UCGCGGUGAA GCUGAACCUU
CGAAGGAAGA GAGGACUGAG AACGAGAAAU GGUGGUUACC CCAGCCAAAG GGCCGUGCCG GUUAUACCAU
CUAAUCGCGU GACAAAUGAC GGAUGUGAGA GACUGUCUGA GAAGAUGCAA GGAGUCGAAG CACUACGAUC
CGAAUUAAGG AUUCUUGAAG AACUUGAUGC CGCAGUGGUG GAGAAGCUCA ACAAACGCAG GAACCGUGAA
GCGGAUGAUA GCGAGUUCUC GCGCCCUAUG CACGAGAGCA CGCAUGAUGU GACUUCCUUU UGUUCAAAAG
CGAAUUCGGU AGGCACGGCC CUCGAAAGGG CGGUGCUCGU GGAAGAUGCG GUGAAAUCUG AAAAGAUCUC
GAGGAUGGCU AAAGAUCUGG UUCGUAAGGG GACUGUUUCC GAUGAGGAAA UCACCAACAC UUUAUCUGAU
GAUGAAGCGA UUGAAGAAGU UCCAGUCUCC GAAGAGCGCG ACGACUCACC CAAAACGGUA AGGGUGAGUG
AAUAUUUGAA UAGAUUGAAC UCAAGCUUCG AAUUCCCGAA GCCGAUCGUG GUGGACGACA AUAAGGAGAC
UGGAGGGUUA ACCAACGCGG UACGCGAAUU CUACUAUAUG CAGGAGCUCG CUCUAUUUGA AAUCCACAGC
AAACUGUGCG CUUACUACGA UCAGUUGCGG AUCGUGAAUU UCGAACGUUC UAUGGCCCCA UGUAAUGAGG
AUGCUCAGUU GUACGUUCGU AAAAACGGUU CCACAAUAGU GCAGGGCAAA GAUGUGCGUU CGAACAUCAA
GGAUUUUCAC GAUCACGAUU UUCUCUUCGA UGGCAAGAUC UCCGUAAAUA GACGACGGCG AUCUGGAAAC
GUUCUGUACC AUGAUAACCU UUCUUUUCUG GCGAGCAACC UGUUUCUGGC GGGAUACCCU UUUUCACGGA
GUUUUGUUUU CACUAACUCU UCGGUGGAUA UUCUUCUUUA UGAAGCUCCU CCCGGUGGUG GCAAGACCAC
GACCCUAAUA GAUUCCUUCC UGAAAGUUUU CAAAAAGGGG GAGGUAUCCA CCAUGAUACU AACCGCGAAC
AAAAGCUCGC AGGUUGAGAU UUUAAAGAAG GUUGAGAAAG AUAUUUCCAA UAUCGAAUGC CAGAAACGUA
AAGAUAAGAG AACUCCAAAG AAGAGCAUAU ACACCAUCGA CGCGUAUUUG AUGCACCACA GAGGUUGUGA
UGCUGACAUA CUUUUUAUCG AUGAGUGCUU UAUGGUUCAC GCCGGUAGUG UGUUGGCGUG UAUUGAAUUC
ACUAGGUGCC ACAAAGUUAU GAUCUUCGGA GACAGUCGAC AGAUUCAUUA UAUUGAAAGA AAUGAACUCG
ACAAGUGCCU UUACGGAGAC CUUGACAGGU UCGUAGACCU GCAAUGUCGU GUCUACGGUA ACGUGUCGUA
CCGCUGUCCA UGGGACGUCU GCGCCUGGUU AAGCGUUGUU UAUGACAACA UGAUCGCCAC CGUUAAGGGU
GAAAGCGAAG GAAAAAGUAG CAUGCGCAUU AACGAAAUCA ACUCGGUGGA CGACUUAGUC CCCGAUAUGG
GUUCUACUUA CUUGUGCAUG CUUCAGUCUG AGAAGUUAGA AAUCAGUAAG CAUUUCAUCC GCAAAGGGCU
CUCUAAACUU AAUGUCUUGA CCGUGCACGA GGCUCAAGGU GAGACAUACG CGCGCGUGAA UCUGGUGAGA
UUGAAAUUUC AGGAGGACGA GCCUUUUAAA UCCAUCAGGC AUAUAACCGU CGCAUUAUCU AGACACACCG
ACAGCUUGAC UUACAACGUC CUAGCCGCUC GGAGAGGCGA CGCCACGUGC GACGCUAUAC AAAAAGCUAA
CGAGUUGGUG AACAAGUUUC GUGUCUUCCC GACUUCUUUC GGUGGUAGCG UUAUCAAUCU CGACGUUAAG
AAAGAUGUGG AGGACAACAG UAGGUGCAAA GCUUCUUCAG CGCCUUUAAG UGUGAUCAAC GACUUCUUGA
GCGACGUUAA UCCCGGCACC ACCGUAAUUG AUUUCGGAGA UCUCUCUGCA GAUUUUAGCA CGGGACCUUU
CGAGUGUGGC GCUAGCGGCA UCGUCGUGCG AGACAACAUC UCCUCCAGCA ACAUCACUGA UCACGAUAAG
CAGCGUGUUU AGCGCAGUGC GGUCGCAGGC GAUUCCGCGC AGAAAGCCUU CCCUGCAAGA GAAUCUUUAU
UCUUUUGAAG CGCGGAAUUA CAACUUCUCG ACUUGCGACC GCUUUACCUC AGCUUCUAUG UUCGGUGAAG
CUAUGGCUAU GAACUGCAUA CGCCGCUGUU UUGAUUUAGA GACCUUUUCA UCUUUGCGCG AUGAUGUGAU
UUCUAUCACA AGGUCGGGUA UUGAGCAGUG GUUGGAGAAG CGUACUCCCA GUCAAAUAAA GGCUUUGAUG
AAAGAUAUCG AAUCACCGCU GGAAAUUGAU GAUGAGAUCU GCAGGUUCAA AUUGAUGGUG AAGCGUGAUG
CUAAGGUGAA GUUAGAUUCU UCUUGCCUAA CCAAACACAG CCCUGCUCAG AACAUUAUGU UUCAUCGUAA
AAGUAUCAAC GCGAUUUUUU CACCCAUUUU UAACGAAGUG AAGAACCGUA UCAUGAGCUG UCUUAAGCCC
AACAUAAAAU UCUUCACCGA GAUGACUAAU AGGGAUUUCG CUUCCGUUGU GAGCAACAUG CUCGGUGAUG
ACGAUGUUUA CCAUAUAGGC GAAGUCGAUU UCUCGAAGUA UGACAAGUCU CAGGAUGCUU UCGUGAAAUC
CUUUGAAGAA GUCAUGUACA AAGAACUCGG GGUUGACGAG GAACUCUUAG CGAUUUGGAU GUGUGGUGAA
AGGCUUUCCA UUGCGAAUAC GCUUGACGGU CAGCUGUCUU UCACGAUUGA GAACCAGAGA AAGUCGGGUG
CCUCAAACAC GUGGAUCGGU AAUUCUCUUG UUACGCUGGG CAUACUAAGU CUCUAUUAUG ACGUGAGGCA
UUUUGAGGCU CUCUACGUCU CUGGUGACGA CUCUCUGAUU UUUUCACGCA ACAAAAUUUC GAAUUACGCU
GAUGAUAUCU GCGCUGAUAU GGGUUUCGAA ACGAAGUUUA UGUCUCCGAG UGUUCCGUAU UUUUGUUCCA
AAUUCGUCGU UAUGUGCGGA CACAAGACCU UUUUUGUGCC UGAUCCGUAU AAGUUAUUCG UGAAACUGGG
AGCUGUAAAG GAGGAUGUCU CUAUGGAUUU UCUCUUUGAA ACUUUCACCU CCUUUAAGGA UUUGACUUCG
GAUUUUAACG AUGAGCGCGU GAUUCAGAAA CUCGCUGAGC UUGUUGCUCU CAAAUACGAC GUUCAGAGUG
GUAAUACCGC UCUAGCGUUG AGCGUGAUAC AUUGUUUGCG UUCUAACUUU CUAUCGUUCA GCAAACUGUA
CCCUCGUGUG AAAGGAUGGC AGGUUUUUUA CACCUCCGUU AAGAAAGCAC UUUUUAAGAG CGGGUGCUCA
CUCUACGAAA GCUACGUCAC UCCAUUCGGU CAUGCAGUGA UGGUGUGGGA UGAUGAGUAG CACGCUACUC
UUGCGUAGUU UUGAACGGUA CUGUUUCCGC GACUGUGGGA UGAUCACGUG ACAUACACGA UGUGUGUCAC
UGUAUAGAUA UUAUGGACCA GGUUCUGCAG UUCGAGUGUC UGUAUCUGCU CAACCAGGCG GUUUUUGCAA
UAACAUUCGU CUUCAUUCUG CUCAUCAUUC GCGUGAUUAA AUCUUUCCGC AGAAACGUAC ACGAAACUCC
AAUAUCGGCC GUCCGUGGUC AGGGUUUCUC GACUGUUGUG UGAUUUGCGA AAUGGUUGUU UUUGGUUUAG
AUUUCGGUAC GACUUUUUCG ACGGUCUGCG UGUAUAAAGA UGGUAAGGUU UACUCAUUCA AACAAAACAA
UUCUGCGUAC AUUCCGACAU ACCUCUACCU UUUCUCCGAA ACUAAUCACA UGGUUUUUGG UUAUGAAGCC
GAAUCACUGA UGCAUAAUGC AAAGGUGAGA GGCUCUUUCU UUAGGGACUU AAAACGCUGG GUGGGUUGCG
ACUCCAGCAA CUUUAGUGAC UACUUUGAUC GCCUGAAGCC ACACUAUGCG GUUCGCCCGU AUAAAAUAGG
UACUGGUCUG AAUGAUACGG UGAUUAUAGG AAACUACGGG GGUACCGUUC GUUCCGAAGU GCAUUUGCCA
GGACUAAUAG CUUCCUUUAU CAAGGCGAUG GUUAGUUGUG CCGAGAAUGC UUUUUCUUGC ACUUGCACGG
GAGUGAUAUG UUCAGUGCCA GCGAAUUAUG ACAGUGUUCA GAGGAAUUUC ACUGAUCAGU GCGUUUCCUU
GAGUGGUUAU CAAUGUGUGU ACAUGGUCAA CGAACCUUCC GCGGCUGCUU UAUCAGCGUG CAAUCUGAUA
AACAAGAAGU CGGCGAACUU GGCUGUAUAC GAUUUUGGAG GUGGGACUUU CGACGUGUCU AUUAUUUCCU
ACCGCAACAA UACAUUCGUA GUGCGCGCUU CUGGAGGAGA UUUAAAUUUG GGAGGAAGGG AUGUUGACAG
AACCUUUCUG ACUCAUCUUU UUUCUCUAAC AUCCUUAGAA CCCGAUCUUU CGUUAGACAU UUCAAAUCUA
AAAGAGUCGU UGUCUAAAAC UGACGCGGAA AUAGUUUACA CGCUAAAAGG GAGCGACGAU AAAAAGGAGG
AUGUUAGAGU GAAUAAAAGU AUUCUCACUA CUGUUAUGCU CCCUUACGUC AAUAGAACUU UAAAUAUUUU
GGAAGCAACA CUUAAAUCGU ACGCCAAAAA UAUGGGUGGG UUACGGAGCG UUAAAUGCGA CUUAGUGCUA
AUCGGUGGUU CUUCGUAUCU UCCGGGUUUA GAAGAUAUCU UAUCGAAACA CCGACGAAUC GAUCGAAUAU
UGAAAGUCGC UGAUCCCCGA GCGGCGGUCG CGGUCGGUUG UGCGCUAUAU UCGUCGUGCC UUUCAGGUUC
ACAAGGGCUG UUAUUAGUCG AUUGCGCGGC UCACACCAUC GCAAUAGCCG GUAUGAGCUG UGACCAGAUU
AUUUGCGCUC CAGCUGGAGC UCCUAUUCCC UUCUCGGGGA CCACACCGUU GUACUUACCA AAAGCUAAUA
GAAAUUCACA ACGUCAAAUC GCAGUAUUCG AAGGUGAAUA CGUGAAGUGU CCCAGAAAUA GAAAAAUUUG
CGGUUCAAAC AUUAAAUUUC UUGAUAUCGG UGUCACAAGC GUUUCAUACU CACCCAUCAC UUUCUAUUUA
GACGUAACCA UAUCUAGUGU GGGGGCUAUC UCGUUUGUGG UGAGAGGUCC CGAAGGAAAG GAAGUUUCCU
UGACGGGCAC UCCCGCUUAC AACUUUUCUU CUGUAGUCCU CGGAACACGU AGUGUCCGAG AGUUGCAUAU
UAGUCUAAGC AAUAAAGUUC AUCUCGGCCU ACUUCUACAC CGGAAGGCUG ACCGGCGGUU ACUAUUUUCC
GAAGGUGAAG CGGUUCGCUA CGUGGAAACA GUAGAAGUUG CGGAUGUGCU AAAAGAAUUU AAGAGCUACA
ACGCUAGUUC UCUACCACCA GACGAAGAUG UCGAACCACU CAUGGGGAAG UCUGUUCAAA AAGUACUACG
GGGAGGCAGA UUGGAGGAAA UACCUCUCUA AGAGCAUUGU AGCCCACACA GCUAACAUAA AAACUUUGCC
GGACGUUCAG UUGUACGGCG GUAGAACUGU GAAGAAGUCC GAAUUUGAAU CGGCGACUCC GAGGUCGUUC
GAGCAGGAAU UAGGACUUCU GAUGUUAAGU GAACGGGACG UGGGUUGGUG UAAGAUGUGC GGGAUAACUG
UGGAGGAGGC AAUGUACCAA AUCACGAACC CUGAAGCGUA UCCGAUCACA GCGGAAAAAU GCGAUCCAGA
UGUGAAAACU GAGGGGCAGA AAUACACGAU GGAAGACGUG AUGAAUUUCA UGCGUCGUUC CAACCUAGAU
AUAAAUGAUA AAAUCUUAGC GGAACAGUGU UGGUCUCUAU CCAAUUCGUG CGGAGUUUUG AUUAACCCCG
AUGAUAAAGA ACGGUUUGUU GCUCUCACUU UUAAGAAUAA CGAAUUGGUU AACGAUUCAA GCAACGCGAA
CAUAGACUGU CGCGUGGGUG AUUACUUAGU UUACGCUAUG UCCCUAUUCA AUUGUAGGAG UCAGAAGUCG
CAAGCGGGUA ACAUUUCGCU CUACGAAAAG UAUUGCGCUU ACAUCAGAAC UUACUUAGAA AAUACCGAUU
UAUAUUUCAC UUCUCCCGAU AGGAUACCGU UACUCACCGG CAUUCUCUAU GAUUUCUGCA AAGAGUAUAA
UAUCUUUUAU UCCACAUACA AACGAAACGU UGAUAAUUUC AGGUUCUUCC UAACGAAUUA UAUGCCCUUG
AUUUCAGACA UAUUCGUUUU CCAGUGGGUA AAACCGGCAA CGGACGUGAG AUUACUAUUC GAUAUAAGCG
CAGCCGAAUU GACUUUAGAA GUUCCAACGU UAAGCUUAGU GGAUUCGCAG GUGGUGAUAG GACAUGUCCU
GAGAUUUGUC GAAUCAUACA CUGCUGAUCC GGCUAUUGAC GCGUUGGAAG AGAAAUUGGA CGCUAUAAUG
AAGAAGAGUA AUCCUCAUCU AUCUACGGCG CAACUGUGGG UAGGAUUCUU CUGCUAUUAC GGCGAAUUUC
GCACCGCACA ACGUCGGGUG GUGCAAAGGC CGGGUGUGUA UAAGACGCCC AAUUCGGUCG GAGGUUUCGA
GAUUAAUAUG AAAAACGUCG AAGAGUUUUU UGAUAAGAUC CAACGAGAGG UGCCAAACGU GUCUCUACGG
CGACAAUUCA ACGGAGCCAG AGCGCACGAG GCGUUCAAAG UAUUUAAAAA GGGAAACAUC AGCUUCAAAC
CCAUAUCUCG GUUAAACAUA CCGAGGGAGU UCUGGUAUCU GAAUGUGGAU UAUUUUAGAC AUGCGAACAG
AAGCGGACUG AGCGAAGAGG AGGUGCUCAU UCUUAAUAAU AUAAGCGUAG AUGUUCGUAA AUUGUGUGCG
GAAAGAGCGU GCAGCACUCU GCCUAGCGCG AAGCGCUUUA GCAAAGGUCA UAAAAGUAGU GUGCCAUCAU
UGCGUCAAGA GAAAAAUUAU AGAGAUCCGU UGAUCGCGUU AAGAAACUCU UUAUAUGAGU UCCGGCACGG
GAAUCGCGGU AGGAGGGUCU GAGGCCAUCG AGACCUCAGG UUUCGUGCUA UCUACGCGAA AGGAAGCCGU
CGAUAAGUUC UUCAAUGAAC UAAGGAACGA AAAUUAUUCU UCGGUCGACA GCAGUCGGUU AAGCGACCAA
GAGGUGAAAG AAGUUCUGGA GAAAAGUAAA GAGAGCUUUA AAAGCGAAUU AGCGUCCACC GACGAACACU
UCGUUUAUCA CAUCAUCUUC UUUCUGAUUC GAAGCGCCAU UAUAUCCACG AGCGAUAAGG UAAAAUACGU
AGGGAGCCAU AAGUACGUGG UCGAAGGAAA GACGUACACA GUUCAAGACG UUUGGGUUUU UAACAUGAUU
AAGGGGCUGA CCAAGCAGUA CAAAAGGGUG AAUGGUUUGC GUGCUUUCUG UUGUGCCUGU GAAGAUUUGU
AUCUGACAGU UGCUCCCGCG AUGUCUGAAC GCUUCAAAAC CAAGGCUAUC GGUAUGAAGG GCCUACCCGU
CGGAAAGGAG UACUUAGGUG CUGACUUUCU CUCUGGAACG AGUAAAUUGA UGAGUGAUCA CGAUAGAGCU
GUAUCCAUAG UCGCGGCCAA GAACGCUGUC GAUCGUAGCG CAUUUACCGG UGGAGAGAGG AAGAUAGUUA
GUUUGUAUGA CUUAGGAAGG AACUAAGCAC GUUGUGCUAU AGUGCGUGUC AUAAUAUUAA GUACUAGUGC
AUAUUAACAA GCAGUAGUGU UUAAAGCGUA GUGAUAAGAA ACAAUGGAGU UGAUGUCCGA UGAUAACUUG
AGCGGUCUCG UCAUAACCGA CGCUUCUAGU UUGAAUGGUG UCGAUAAGAA ACUGCUGUCU GCGGAGGUCA
UAAAAAUGCU UGUGCAGAAG GGGGCGCCCA GCCAAGGUAU UGAAACAGUC UUUGGGCUAC UGCUCUACGC
UCUCGCAGCG AGAACCACAU CGCCCAAAGU UCAGAGGGCU GAUUCUGAUA UAAUCUUUCA AAACACUUAC
GGUGACAAGA CUGUUGUCGU GACAGAAGGU GAUCUCAAGA AAGUGCUUGA AGGGUGCGCA CCUCUUAAUA
GAUUCACUAA CAAGCUGCGA ACUUUCGGCC GCACGUUUAC GGAGGCGUAU GUUGAUUUCU GCGUGGCUUA
CAAGCAUAAG AUGCCUCAGC UCAACGCGGC CGCAGAAUUG GGGAUACCAG CAGAAGAUUC GUACCUAGCU
GCGGACUUUU UAGGUGCUUG CCCGAAACUC UCUGAAUUAC AACAAAGUAG AAAAAUGUUU GCAAGUAUGU
ACGCUUUGAA GACUGAGGGC GGAGUAGUAA AUACGCCCGU UAGUAAUUUG CGCCAAUUAG GUAGGAGAGA
AGUUAUGUGA UGGAAAUUUG CGCUCAGAAU CCUGAGGCAC UAGUGCUAUU ACGCACAAAU CAAAACACAA
CAUUACUAGU CGUCAAGUCU GAUGAUGAAG UUAAUCUGCC GAAAUUGUUA AUAUGCGGGU AUUUACGCGU
GUCGCAUCGC GGGGAUGUGA CUGGUUGUAA UCGCGAAGAC GUAAUAAAGG AUUUUGAAGG UGCACAUCAC
ACCGUCAUCC GCUCGAGAAC GGUCCGGUAU GAUUACGAGU CCGCAGUUAA AGAGUACAAU AACGCUGAUU
GCGUGGUGAA AUUCUUUUUA GAAACAGGAG ACGUUUUUUG GUUUUUUCUC CAAAGUGACA UCAAAGGAAG
AGCGGCGCGA CACUUGCGCA CCUUCUUCGA AGCUAACAAU UUCUUCUUUG GAUCGCAUUG CGGUACCAUG
GAGUAUUGUU UGAAGCAGGU ACUGAUAGAA ACUGAGUCUG UAAUCGAAUC UUUUUGUGAA GAAAGAAAUC
GUUAAGAUGA GGGUGAUAGU AUCUCCUUAU GAAGCUGAAG ACAUUCUAAC AAGAUCAACU GAAAUGUUGC
GAAACAUAGA CAGUGGAGCG UUGGAUACGA GAGAGUGCAU UAAAGCGUUC UCGACGCUAA CGCGAGAUUU
GCACUGCGCA AAAGCAUCGU ACCAAUGGUG CGUUGACACA GGGUUGUGCC AACGUGAUUG CGCCGAAAAA
CGCUUGAUCG ACACCGUUGA AUCAAAUCUG AGACUCGCUC ACCCUCUCAU ACGCGAGAAG GUGGCGACUC
AUUUUUGCAA AGAUGAACCC AAAGAACUAG UGGCGUUCAU CACGCGGAAA UACGUUAAGC UCACAGGUGU
GGCGGCGCGG GAGGCUGUAA AAAUAGAAAU GCGCACUCUA UCUAAGACAG UUUUAAAUAA ACUAUCUUUA
GAAAUGGCCU UCUAUAUGUC ACCUCGAGCG UGGAAAAACG CAGAAUGGUU AGAUCUCAGG UAUACGCCUC
UAAAAAUAUA CAGAGAUCUU UUACUAGACG UGGACACACU CAACGCCUUA UGCGAGGAGG AUGAAAUUCA
CGUCGUCGUG ACCAAUAAAG AUGAAGACGA GAAUCAUGAU CUCGAGCUUC AAGAAGACUG UUAAAGUCUA
AAAUUCUAGA AUCGCAAUAU GUUUGCGAGU AGUAAAUAAA AUCGAACGUG GGUGGAUCUA CCUGACGUAU
CAACUUUAGC UGUUACUGGG UAAUUAAGCU AACAAGUGUU AGCGUAAUGU GUAUGUUGAU GAAGAGAAAA
UACCGUUUCU AGAUCGGUGA CUUUUCUCUU CUUUUAUUUU UAAAAUAAAA AUAAAAAAAA AAAAAAAGAA
GCGAGCU
Products
| Product | polyprotein |
| Description | polyprotein |
MSSLAISALP SAVAQLSFGQ PAATVAKSFY MTSLPSLQTC FTQCEFSSLF ICLASFQKIK TFLSFLSSVR
ELALFSELST IGFCCEFIRL GVGEHPLFFV SFQCGPLSVC LGCVNGIFAV LNISFPFLDV ASLLMDVGDV
VTPTKVRISK RAKKLNKRAF SIARAAARIR RSKVGNKEVR ISHVQPLPAG CLRFSQNKNG TELIIIGRDV
GVVARVKTAA PVVRRRGGGG RVPLIPLVAV SPFGVRYRCY APSCGAIACF KNKLASRVAA NDSRAEKLLS
ARRRKLQQQN FNSRVAKKAR DVTASRVDMA EGEVTPPRHI FFGSFSEPFP IPSSSGMARS VLREEPAIVT
CGASAPAIKE TPRVSVKKAD FSPAAPVPRE ALTPRVAKRG EAIVISGVVH EVLNKIREGV LRFRVGGDMR
FSRFFSSTHG CKIVANVRTN TSVWLNCTKV NGEKFSVAIP CSVDYVAMLR YVSGGKFPLV LMSRECYPDG
LCYMAHMRYL CAFFCQPFRE SDYPLGSWPS VARLKALVLK RFGDEALNIG VRGYYVSRRA FHCDYDSKYA
RSLMRLAGYV GGDEVIHSTL ASTVVLKPGE RARDRPKSIS FGSFCCELRY VESVNPDAPR LRSEKVLRKV
EPRNGVRTES ADVGSNVTRK RDARIDRKFS HLLAGSVNKV KKRIAAGVLR YRVGGDMDFH NSFLTQAGYH
LLVRRKTSSS VCVELSTPDG RLLRRDVIPC SRDYAAMLSF AAGGRFPLVL MTRDKYKNGY CYLAHCRYAS
AFLLKGFHPA VFDIGANPTA AKLRSRMVSV LGDRSLSLNL YGSFTSRGIF HCDYDAAYVK DLRFMSAIVA
GKEEMGEVVA SDITPAMKQK TIEAVYDRLY GSNDSLLKLS IEKDLIDFKN DVQSLKKDRP VIRVPFYMSE
VTQNSLTRFY PQFELKFSHS THSDHPAAAA SRLLENETLV RLCGHSVSDI GGCPLFHLNS KTQRRVHVCR
PVLDGKDAQR RVVRELQYSS VRSGDDEKIL EGPSNVDVCH YPLGVCEHES STMMMVQVYD ASLYEICSAM
IKKKARITYL TMVTPGEFLD GRECVYMESL DCDIEVDVHA DVVMYKFGSS CYSHKLSIIK DIMTTPYLVL
GGFLFSVEMY EIRMGVNYFK ITKSEVCPNI SCSKLLRYRR ANSDVVKVKL PRFDKKRRMC LPGYDIIYLD
SKFVSRVFDY VVCNCSAVNS KTFEWVWSFI KSSKSRVIIS GKIIHKDVNL DLKYVESFAA VMLASGVRSR
LASEYLAKNL SHFSGDCSFI EATSFVLREE IRNMTLNFNE CLLQLVKRVA FATLDVSFLD LDATMESITD
FAECKVAVDL EELGCLRANA ENEKIRNLAG DSMAAKLASE IVVDIEAKPV AKHAEHPKSE VSEKKEHAKP
GLRGGSKAGV LKEFLDFVLS SASRLFSCVA DQQRIKSYVH YLDTAVSFLD QNYENLSFIM RVLSKGYSCM
FSYLANRGSL ANRVASAVQI VREIAVLCAN VSVSKAKVVV TFSAAVCAMM FNSCGFSGDG REYKSYMHRY
TQVLFDTIFF EDSSYLPIEL LSSAICGAIV TLFSSGTSVS LNAFLLQITK SFSLELIVRN VVRVTHSLST
TATDGVMRSV FSQIISHLLV GNTGNLAYQI AFLTGVVPLL VKKCVGLIFS MSEDTYSGFI KHGVSEFSFI
TNILKYLRGQ LVDELKAVVQ GVFDSNKHLF RDVTQEAIRS TVMQIPTAVV DGLKCAASKV YSGIVGKKTN
VGEEKSRGGG DDHEEYFSCD ESETPGLRGG SRSGFSILFF FSRLVRRARI LIGRIKHRCF SKIFESISLK
IHELRTFLLG KKRSDVGVYE FLSEDVADAL SSIEECDEIE NLIGDGFRDM ADDSLTDMNY FDFSDEFLAS
VNGLPCAGLR GGGRRVGMLA ILNYVYNSLS IMARAASKNS TFTSLIIFSR GLVDRIRNIF SNKESVVELV
RKYVKNFLKS RMRGLGLRNE HVVNSFGELV PLLLRNKLSE TFIYRAVPMS KWCWKVCLSA ERREKFFALV
CLVTLGFPYF ARFLGGVVCD KLLSSLRRAY DRVIVFLKER CDAAMNGLRC LFHFDGNGDS TSAGLKGGGS
QTFLWGLLLR LVRFALSLGY AGCKCVFSHH DLFFLCVSLV EEVNMIAKIL GCLSFFSRPI SSALAFALLQ
PERFVEYSGK LSTTFLFFLK ISPRVPLKIK GFFEWVAGSP LLRGVRRFLR LIAVKLNLRR KRGLRTRNGG
YPSQRAVPVI PSNRVTNDGC ERLSEKMQGV EALRSELRIL EELDAAVVEK LNKRRNREAD DSEFSRPMHE
STHDVTSFCS KANSVGTALE RAVLVEDAVK SEKISRMAKD LVRKGTVSDE EITNTLSDDE AIEEVPVSEE
RDDSPKTVRV SEYLNRLNSS FEFPKPIVVD DNKETGGLTN AVREFYYMQE LALFEIHSKL CAYYDQLRIV
NFERSMAPCN EDAQLYVRKN GSTIVQGKDV RSNIKDFHDH DFLFDGKISV NRRRRSGNVL YHDNLSFLAS
NLFLAGYPFS RSFVFTNSSV DILLYEAPPG GGKTTTLIDS FLKVFKKGEV STMILTANKS SQVEILKKVE
KDISNIECQK RKDKRTPKKS IYTIDAYLMH HRGCDADILF IDECFMVHAG SVLACIEFTR CHKVMIFGDS
RQIHYIERNE LDKCLYGDLD RFVDLQCRVY GNVSYRCPWD VCAWLSVVYD NMIATVKGES EGKSSMRINE
INSVDDLVPD MGSTYLCMLQ SEKLEISKHF IRKGLSKLNV LTVHEAQGET YARVNLVRLK FQEDEPFKSI
RHITVALSRH TDSLTYNVLA ARRGDATCDA IQKANELVNK FRVFPTSFGG SVINLDVKKD VEDNSRCKAS
SAPLSVINDF LSDVNPGTTV IDFGDLSADF STGPFECGAS GIVVRDNISS SNITDHDKQR V
| Product | polyprotein-RdRp |
| Description | polyprotein-RdRp |
Publications
- Atabekov JG. (1994) Beet yellows closterovirus: complete genome structure and identification of a leader papain-like thiol protease. Virology. 198(1):311-324. [abstract]
- Karasev AV, Boyko VP, Gowda S, Nikolaeva OV, Hilf ME, Koonin EV, Niblett CL, Cline K, Gumpf DJ, Lee RF. (1995) Complete sequence of the citrus tristeza virus RNA genome. Virology. 208(2):511-520. [abstract]
- Klaassen VA, Boeshore ML, Koonin EV, Tian T, Falk BW. (1995) Genome structure and phylogenetic analysis of lettuce infectious yellows virus, a whitefly-transmitted, bipartite closterovirus. Virology. 208(1):99-9110. [abstract]
- Agranovsky AA. (1996) Principles of molecular organization, expression, and evolution of closteroviruses: over the barriers. Adv Virus Res. 47:119-158. [abstract]
- Karasev AV, Nikolaeva OV, Mushegian AR, Lee RF, Dawson WO. (1996) Organization of the 3'-terminal half of beet yellow stunt virus genome and implications for the evolution of closteroviruses. Virology. 221(1):199-207. [abstract]
- Ling KS, Zhu HY, Drong RF, Slightom JL, McFerson JR, Gonsalves D. (1998) Nucleotide sequence of the 3'-terminal two-thirds of the grapevine leafroll-associated virus-3 genome reveals a typical monopartite closterovirus. J Gen Virol. 79 ( Pt 5):1299-1307. [abstract]
- Cevik B, Lee RF, Niblett CL. (2008) In vivo and in vitro expression analysis of the RNA-dependent RNA polymerase of Citrus tristeza virus. Arch Virol. 153(2):315-321. [abstract]