Recode v. 2.0 / Database of translational recoding events.

 

Details for "r201082"

Accession numberr201082 [export]
Locus namepolyprotein-RdRp
Descriptionpolyprotein-RdRp
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismBeet pseudo-yellows virus [details]

Sequence

GenBank IDsNC_005209
Sequencess-rna of 8007 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeUnknown (position: 0)
Description+1 (or other) ribosomal shift into +1 reading frame
CAUAAAUUUA UUUUAUCAUU UGUUAUUAGC CUACGGCGAA AUAACUUUUC AAUCCCCACC CGCUGAUUAA CGUCAGCACC CAAGUGCGGC AUUACGGUGU CUCACUUAUU GGUUAACAAA UUUGCGGCGA UUUAUCGUCU CAAAUCUAUA ACCAUUCAAC CCAAUACCAA ACAAUAUAAG GCUGCCAGUA CCUCAAACUA ACCUGACUUU AUCAAGCAUU ACUUGGUUGU AAACGUCAAU ACAAUGCCGU CAAUUAACAG GACAAUCACC GGCACUGAGU UGUCCAACAA CUUGUCCCUC AAAGGGAAGA UCACAGUGUU CCCAUUAGAC CCAUCUAUAG AAGAGAAGUU CAACUUCCUU AAGGAGAAAA ACUUCAAUCU UAAGAAAGUC UUUUGUGCCC ACAGAUUGCA AGUUUUGGUC GAUCACUUCA ACCUCCAUGG UUGCAGUUUC AAGAGAAUGC CUGUCCCGCU CAGAAACGCU UUUGGCUAUG AUUUUUUAAA GAUAAACCAA UUUAUAGACC AGAAGUUGUC CGUUAAAAUC GGUAUGGAAA CAAUCAAAAA UACAUCCGUU CUUGAAGACA UAACUGGUAA AACAGGUUUU UCAGACGGCU ACUUGGUCAG GAAAUAUGAA GAUCGCCGUC ACGCGGAUGU CUUCAUCUCA UUUGGCAGAU ACUUUAAAUA UGAUCAUGAU AUUAUGUUUC GAUUAACGUU UGCAAAAACU CAUAAUCGAA GGCGACUUCG CACCAUAGUU GAGACCUCUC UAGGGAGAAU GGAGGACAGA GGCGAAGUCU ACUUGAAACC UUUCACUCUG UUUGACCGUC UCCCGCCCAA AGCUUUUGAA AUGCAAUGUC UUCUUCUCUC CGUUAUCGAG CGCUGUGAUG ACAUGUGUGA GAUCGUCAAC UAUUAUAAAA AUACCAAGUU CUCACAACCU GUCAAGAAAA UCAGAGAAAA AUUUUAUCGC AGGUGCACAG UAACUAUGAU UGGAGUGAAC CAGUCCAGAC CACCUGUGCA GAUGGUGCCU CGUAUGACAC CUGUGAAACC CACUUUCAAG GUGACACCCU ACGCUUCAAC UCAACACAUC AUCAGAGACG AUGGUGAAGA AGAAUUUGUG GUUAGACUUC GCAGUGGAAA GGUCAUUGUU GUGAGGAACG ACCGAAGAGC UGUUGCGAAU CUGUUCAACG CAACCCUAGG AGAAGGCACC UAUAAAGUCC ACAGUGAAGC CUUCACACCC AACGGCAAGA GAUUCAAACA CUACAAAAGG GCAUACUGCU GGUUGGAUGC GUUCCUUCUA GCUAGGAAGA AGAUACCUUU AGAGACAGUA CCACAUCCCU GUUUGAGUUA UGGGUAUCUU CUCCGUUGUG GUCUUGAAAA AGUGAUGAGA GGACGCAUCA CGAUGGUCAG UGCCACCCAU GGUCACUUCA CGGUUGAGCG AGUCACUGAG ACGAGAAACG CUCGACGUGA CACCUACGUA GGCGUUCGCU GGGACGAUGG CGCUGAAGUU UCCUUGAAAA ACAUUAGCAA UGUUUUUGAC GACAUUUGCU CUGGCAUCCU UUCACAGACC ACGCUCCGUG CCGAGAACGA CGUCAUGACG AACAUCGUCA GACGCGUGUC AGACAAGAUC AAUUCUGUGA ACAGCAUGGA AAAGGAACUU ACGAUUAAUG UUUGUCUCUC CAGUUCCCAG AAGAAGAAAC UUUGCGUUUU GUUUCCCGAA CUAAAUUUUG AUUUUUCGGA AACUUCUUAU UCGUCACAUG CACUCUUCAC AGCUAUGAGG CAAUGUGAAA AUUAUGUUAU GGCGAAGAGA AUGGGUUUCU CUAAUUUCAU CGACGCCGGA GGUGAUAUCG UAUCAGUGUU GCACAAGAAG CUGAACAACG UGCAUGUUUG CUCCCCAUUA GUCGAUGUCA AAGAUGCACA CAGGCACAUG ACUAGGAGUA ACCAAAUUGA UAAUAUGAUC GGUCUCUCUG AAACAGCAAC ACUGUGUAAU GAUAAAUGUC AGGACUGCAA AGUAGAAAGA CAGAAUAUCG UCGCCGUUGA GGUUUACGAC AUGACUUUGC ACGAUAUGGC GAAAUCUUUG CUGUCACAUA AAUCGAAGCG UUUCGAUUUU ACUGUCAUUA UUCCUCCAGA GGUCUGCGAA CCUGAAUGUG ACGUGAGACU UUUUGACGAU UCUUUGCGGG UCCAUUCUGA CGGAAACACA GUCACCUACU UCUAUGGUGA UUGUGGUGAG AGUUAUGCCC ACGACGCUCA AACUCUCAGA GACAUACUGA GAAUGCAGAU CUUCUCGGUU GACGGGGUUG UUUUCAAGAA GACACUCGAG UGUUCCAAAG AAGCCCUUCA CUUCUUUUCC CUAGUACCAU GCGUCGGUAU GCCUCCUGGG AGACUGACUU UCUCGUCGUA CUACUCACGC UCCGAACAAG ACAAAGUUCU GAUGGUAAUC CCCUCAAGAG ACAAAUUCGG AGGGAUCUCU AAUGUUAAGG UGAAGGUUGA CAAAUCAAUC GUUUACCAUC UUUUGGAAUA CGUGAUGAAC ACUGCUCUGA GAGUUGAUGA UAAAGCAAUU GAAUAUCUGA UUUCUCAAUU UAGAGCGAGA AAGAGCAUCU CGAUCAAGGG AGGUAAAGUG AUUCAAACCC CAUUCGAGCU ACCAUUAGAU UUAUACCCCG GUUUUCUUGG AGUCAUUCUU GGUGAGGGGA UUAGAUUGAG AGAGAAAACU CAUUAUAUUG CAAGAAUGAG UUACUACAGA CAUUAUCUCC CGACGAUCAU UAACAUAAUG AUUGCGUUUA UGAAUAGAAC UUUCACCAAA GCGCGUCAGU UUUGUUAUGA AAGCAUCGUU GACAUGUUCA GAUAUGUUAU GGGCGAUUCA UUUAUCAACG AUGCCGUUAA CGGAGAUAAA AGAAUUUUUG AUAUCAUGGA AGUGUAUGAU UUUCGUCAAA CUGUCAACAU CGUCGGAGAU GGUCAGAAAC GGGACGUCAU UAACGAAUCG UUUCAAAAAU UUUUGAAUGA AUCGAAAGAG AACCUGAGGA CACUCGACGA UAAGUUUUGU GAGUUAGACG AAAUGUUCAC CGAUUCAGAA UCAGACAAAC UGAAAGAUCU UGUAUUGUCU GGCGGUGGUG CUUCCAAUCA GUACGUUUUU AUCUCCUUUG AUCUCUACAA GCGUAUUCAU GGCUUCGUAU CUAGGCUUGU CUCGAAGAAA UCACUUGUUG ACAAACUGGU GGUGAUGAUU UCAAAGGUGA UAACUUAUCU CCUUAACAAA UUCAAGAAGA UGAGCCAAUC UGUUGUCACA AUCAUCUCUG AUGUUAUUCG AGCCAUAAUC GACUACGUUC GGACUGGCGA CUCUAGACUG UUGAAAGUCU UCAAAACCGC CGGAGAGAGA GUGACGGGAA AAAUUUCAGA CGUCAACAAC UCUUGGAUGG AUGAAUUGGA GAAGGUGCUU GAUGAUGAAG AUCAAUUGAU CUCUCGAAGC GAAAUCGAAA CCGUUGACAA CUCAGAUCAA AUUGAUGAUA UUAGACCGGA GGGUGUUGAG AUGAGCGUCA UUCAAUCUGC CGAGAAUAUC GUUCUUGCUG GCGGGGGCGC ACAUUCUUUU AAUCUCCAAA CUCUCCUCAA ACUCUUUCCC AUCAGUGGAG UUUUUAGAAU AAAAUCAACC UGGAAGAGUU UGAUAGUUAG CGUAAGGUCG UUCCUCAAGC GAAUCGUUGA ACUCUAUCAC GAUGUAAAGG AGGUACCUGG GCUGAUCUUA GAUUUCGUCA AAGCUGGUUU GUCAGUUGUC AAAGAUUACG UGACGAGUUC UGAGGGUCUC GAGACUUUGA UUCAAAACAC UUCGCUGACC AUCACCAAUU UGAUCGUAUC AAUUUUUACC GGAAACGUCG GAGUGCUCGG GAUCAUGUUA UCCGACUUCC UUUUCCUUGG UUUGAAAAUC UUUGGUAUCG AGAAGAAAUA UCUGGGUUGC AAUACCGUGA CAGCUCAAGU UGCCAAUGUU UUUCUACCUC CAACUUACUU UGGCCCACUA GCUUUUCCCA UUAGAGGCCU UUUGAGUAAA GUGGUUGAGA CGAAAUUGAA AAUGAAAUGC UCAAAGAUUU CUCAAUUGAA ACCAGCAGCA ACUGAUUUGA UCGCGAAAGA UGUCACUCUC AUAAGAUUCU ACGACAAAUU CUCACCUAGC GCGUUGAGAG UGUGCAUCUA CAUCUCUAUU AUAUUUGUUC UCUUCUCACC AAGGUUGAUG CUUACUCUUG GCAUGUGUUG UUUGUUGAUU GGCGAGAUGA AAAAGUUCCU GAGCACGACA GUUCUACAAA CCAACAUAAG UUUGAGUUAC GCCUCCGUUC UGAAGAAAAC GCAGAAAUCC CAACGGAUGA AGAGGUUUAA AUCAAUCUUG GCAGAAAAAU UUUUGAGAUC GAAGACUGAU AAUCAACAAU CUAAUGAUGA UGAGCCACAG AUGAUUGCCG GUUCCCAGAU CGAUUCCGAU GUUGAUGUUG AGUUUGAUUA UGACGGUUCG UACGUUGAAA AAUCGAAACC AACUCAACCU CUUGUUCAAG AACGGAAGAU GAAAGAUAAG CCCGUCACCG GUAAUUGGGC GGACGUGAGU GAUAGCAGUU CUGUCGGAUC CAUUAUGGAG UUCCUGAACU AUUCGAACUU AAGAGAAUCU ACGGAUAGGA GAUUUCUUAA AUGUGAUGUA ACAUUCGGGU UGAGCGAUAU CAUUUUAAAG UAUCCAAUUU CCAGUCUUCA AGUUUGCGUC ACUGGGGCAG ACUCGAGGAU CAAUGCGCUU GCGGAAUACU AUUAUUUGGA AUCUCAAAAA UUGUGUAUUG AAAUGGGAAA GCUGGAUAAU UUAGCUCGCA UGUUCAAUUC CAAGACCAGC GAGACCAAGU GCUUCAAAGA CACUGUUUGG GAUUUGAGAA ACAAUCUUGA CGACUCAACU UUGUACAUCU CUGAAAAUGG UGACGCUUGG UAUAGGUUGA AACGAGGAGA UCUAAAGAAG ACAAAGCUGG AAGGCGUGUC UAAGAUGACU CUGGACCAAA GCCUGAUCAA UUUUGAUAGA UCUCACAAAG GAGUGCAAUU CACAAGUGAA GAACUUUUGG GUAUGUACAC CAAUAACCGU UGCUUAGGAU UGGAGAAAUU UAUUGACAAA ACUACUGGUU UCAAGGUUGA ACCUUCGACG GAUAAAAUAA AGUUCUUUAA CAAACCUCCG GGCGCGGGAA AAACCACGAC GAUCGUGAAC UCUUUGGUCA AAGAUCUUUC UAGUAGGACC ACUUGCCUAU CUCUCACUUG CACUAACGCG GGUAGGAAGG AAAUCGUGAG UAAAUUGAAA GCAAGAGGUG UUACGUCCCC UCAUCUUUAU GCUAUGACUU AUGAUUCACU CUUGAUGAAA GGCAAGGAGU UCACUAUAAC CAAUUUGUAU UGUGAUGAGA UCUUCAUGGU UCACUGUGGU GAAUGGUUCG CUUGUUUAAA CCUGAUUAAA UGUCAGUCAA UUGAGUGUUU UGGAGACAAA AAUCAGAUUC CUUAUAUCAA UAGGGUUCCC AACACUGUCU GUCAUCACUC UUACAGUGAA UACAUGACUU UCCCCAUCGA GUACGAUAAC AUCUCGUACA GGUGCCCACC GGAUGUCUGU UACAUUCUAU CCAGCCUGAC CGAUCCAGUU GGUAACCCUU UGUACCCGGG AGGUGUUUAC UCUGCUGGCA GUAAUUGUGA CAAUUUGAGA UCCCUUAGUG UCGAACCGAU GAACUCUCCU GAUGAGAUCA AGUUCCGGGA CGAAGACAAA CACAUCACUU UCACACAACC AGAAAAGGAG GAGGUGUCAC GCGCAAUAAG UAAACAGUUG AAGGAUAGCA AAAGCGCGAA UACUGUGAAU GAGGUCCAAG GUGGAACUUU CCCGACUGUC AUGCUCUUCA GAAAUAAGCA GUUUGAUAAU CCUCUGUACU CCGAUGUUAA UCAAUUCAUU GUGAGCAUUU CAAGACACAC UGACAGAAUG UGUUACAAAA CGAUCUCAUC UAAGCUGAAC GACUAUGUGG GCGAGAAAAU UUCGGCGCUU AACACUGUAG CCGAUUACAU CAUCAAGGAG UACAAGUUUA AACGGCGAGU UUGACACAUA CGAUCUAAAG AUCGAUUGUU UGCGGGCCCC UUCGACCUUC AGCCGGCCGU CUGCCUCCCA CCACAGAGCU AUCAACGAAU UUAUGACGUU GAUAAAUCCG GGUUUGAGUG CCUACAAUUU CAUUCAUCGC ACUCUGUUGU UUGAGUACGA GCAGUUUGAA UUGCCUCCAG UUGAAAAUGC GAAACUUGUC CUCAGUCAUU CCAAGCCUUA UGCGGGUGCC GAAUUUAUUG UACCUGACAU AAUGGGGAAG GGUGAAAGGA GCAGGCCAAA CACUUGGAAA CAAGUGAUGA UUUCUCUGUC CCACAGGAAC UUCAGUGCAC CCAGGAUCAA UGAAAACCUU GACACAACGA AGACAGCCGA GAGAUUGAUG UCUGGUUUGA UGACGGGUCU GAAUCCUCUU AAGUUGAGUG AGAACUACGA UACCAUCCUC CCUGAUAUGU ACAGUAUUGA CAAAUGGUUG AACACCAGAG AUGGGGACAA GUAUCGAAAA UUGAAGAGGA GUUUUUCGCA CACUCUGAUG AUUCAGCAGU UCGAGAAUUU GAGGCUCAUG GUCAAGGGAG ACAUGAAACC GAAGAUGGAU AUGUCCAGUU AUUCAACUUA UUCUCCACCG UCCAACAUCA UUUAUUACGA ACACGUGAUA AAUAUGUUUU UCUCCCCUAU GUUUCUCGAG GUUUUUGAUA GAUUAACAUA UUGUUUGGCC GACAAUAUUG UCUUAUACUC GGGCAUGAAU CUUGACACUC UCGGUGAGCU GAUAAGCGCG AAACUUCAAU ACCCGAUCUC AGAGUACAAC ACCAUCGAAA UCGACUUUAG UAAGUUUGAU AAACCUCAAG GUGUCGUUUU CAAAUUGUAU GAAGAGAUUG UGUAUAAGUU CUUCAGAUUU UCCGAAGACA UAUACGAGAA UAUCAAGCUG ACAGAGUAUU UCUGUAAAGC GAAGAGUAGA AGUGGAGUGU CGGUUGAAUU GGGAGCACAA AGAAGAACAG GUUCGCCAAA CACUUGGUUA UCAAACACUC UCGUUACCCU UGGAAUCGUC CUUUCAACCU ACGAUUUGAG AGAUAUUGAU CUUUUGUUGG UGAGCGGGGA UGACAGCUUG AUCUUUUCAA GGAAAUCUUU GAAAAAUCAA GUGAACGAGA UAAACAGAGA CUUCGGCAUG GAGGCUAAAU UCAUUGAGAA CUCGGUCCCU UAUUUCUGUU CAAAGUUCAU CAUCGAGGAU AGGGGUUCGA UUCGUGUUCU ACCAGAUCCA GUUCGAUUUU UUGAGAAGUU GUCUGUACCG AUGAGUUUGA GCGAUUUUGA AAGCGGGGUA AUGUUGCGGG AAAGGUAUAC UUCAUACAAA GACCUCAUGG UAGGUUAUAA UCUGGAUACC AACAUUAUCU UGGUCGACGC UUUGAUUUCC GUUCGAUAUU CCAUUCCGUU AAUGAGCUCC UACGCGGCUU UGUGUUAUAU ACAUUGCAUG UGCUCGAACA UCACAGCUUA UAAACGGAUA UACCACGACA GUUUUGUUGU AAUUAUUUAA GUUUCUUUUA CCUCUGUCUU UAAAAUCCGC GAUUGUUGUA UUUUCAUAUU CAUUGGUUUG GGUUAAAUUA UGGAAGGGGU UGGAUUUCAU UAUCUUUUCU GUUUAAAUGC UAGAACUAUU UGUAAUAGAU GGGACGUUUU UAGGGAUGUC UCCGUUAUCA UUUACAUCCU CUUAUUGUAC AUUUUACUUU UCCUUUUUAU AGUUGCAAAG UGUAUUGAUA UAAAGUUUUC UUAGUUUUUC UUUAAAACUA CUGUUAGGUA UUUUAGUUUU UAUCGUUUCU ACCUUAGAGU CAUAUACGCG UGUUAUACGU AGUGUGUAUU GUAAAAUCUC AAAAAUACAA UCAUUUAUAA UAUUAGUUCA UAGUUUAGCA AUAUUAUAAU GUUUGGUCGA AUGCUACUAG AGCAGCCUGA CCAAACUAGU AUUAGUAAAU AAAGGCG

Products

Productpolyprotein
Descriptionpolyprotein
MPSINRTITG TELSNNLSLK GKITVFPLDP SIEEKFNFLK EKNFNLKKVF CAHRLQVLVD HFNLHGCSFK RMPVPLRNAF GYDFLKINQF IDQKLSVKIG METIKNTSVL EDITGKTGFS DGYLVRKYED RRHADVFISF GRYFKYDHDI MFRLTFAKTH NRRRLRTIVE TSLGRMEDRG EVYLKPFTLF DRLPPKAFEM QCLLLSVIER CDDMCEIVNY YKNTKFSQPV KKIREKFYRR CTVTMIGVNQ SRPPVQMVPR MTPVKPTFKV TPYASTQHII RDDGEEEFVV RLRSGKVIVV RNDRRAVANL FNATLGEGTY KVHSEAFTPN GKRFKHYKRA YCWLDAFLLA RKKIPLETVP HPCLSYGYLL RCGLEKVMRG RITMVSATHG HFTVERVTET RNARRDTYVG VRWDDGAEVS LKNISNVFDD ICSGILSQTT LRAENDVMTN IVRRVSDKIN SVNSMEKELT INVCLSSSQK KKLCVLFPEL NFDFSETSYS SHALFTAMRQ CENYVMAKRM GFSNFIDAGG DIVSVLHKKL NNVHVCSPLV DVKDAHRHMT RSNQIDNMIG LSETATLCND KCQDCKVERQ NIVAVEVYDM TLHDMAKSLL SHKSKRFDFT VIIPPEVCEP ECDVRLFDDS LRVHSDGNTV TYFYGDCGES YAHDAQTLRD ILRMQIFSVD GVVFKKTLEC SKEALHFFSL VPCVGMPPGR LTFSSYYSRS EQDKVLMVIP SRDKFGGISN VKVKVDKSIV YHLLEYVMNT ALRVDDKAIE YLISQFRARK SISIKGGKVI QTPFELPLDL YPGFLGVILG EGIRLREKTH YIARMSYYRH YLPTIINIMI AFMNRTFTKA RQFCYESIVD MFRYVMGDSF INDAVNGDKR IFDIMEVYDF RQTVNIVGDG QKRDVINESF QKFLNESKEN LRTLDDKFCE LDEMFTDSES DKLKDLVLSG GGASNQYVFI SFDLYKRIHG FVSRLVSKKS LVDKLVVMIS KVITYLLNKF KKMSQSVVTI ISDVIRAIID YVRTGDSRLL KVFKTAGERV TGKISDVNNS WMDELEKVLD DEDQLISRSE IETVDNSDQI DDIRPEGVEM SVIQSAENIV LAGGGAHSFN LQTLLKLFPI SGVFRIKSTW KSLIVSVRSF LKRIVELYHD VKEVPGLILD FVKAGLSVVK DYVTSSEGLE TLIQNTSLTI TNLIVSIFTG NVGVLGIMLS DFLFLGLKIF GIEKKYLGCN TVTAQVANVF LPPTYFGPLA FPIRGLLSKV VETKLKMKCS KISQLKPAAT DLIAKDVTLI RFYDKFSPSA LRVCIYISII FVLFSPRLML TLGMCCLLIG EMKKFLSTTV LQTNISLSYA SVLKKTQKSQ RMKRFKSILA EKFLRSKTDN QQSNDDEPQM IAGSQIDSDV DVEFDYDGSY VEKSKPTQPL VQERKMKDKP VTGNWADVSD SSSVGSIMEF LNYSNLREST DRRFLKCDVT FGLSDIILKY PISSLQVCVT GADSRINALA EYYYLESQKL CIEMGKLDNL ARMFNSKTSE TKCFKDTVWD LRNNLDDSTL YISENGDAWY RLKRGDLKKT KLEGVSKMTL DQSLINFDRS HKGVQFTSEE LLGMYTNNRC LGLEKFIDKT TGFKVEPSTD KIKFFNKPPG AGKTTTIVNS LVKDLSSRTT CLSLTCTNAG RKEIVSKLKA RGVTSPHLYA MTYDSLLMKG KEFTITNLYC DEIFMVHCGE WFACLNLIKC QSIECFGDKN QIPYINRVPN TVCHHSYSEY MTFPIEYDNI SYRCPPDVCY ILSSLTDPVG NPLYPGGVYS AGSNCDNLRS LSVEPMNSPD EIKFRDEDKH ITFTQPEKEE VSRAISKQLK DSKSANTVNE VQGGTFPTVM LFRNKQFDNP LYSDVNQFIV SISRHTDRMC YKTISSKLND YVGEKISALN TVADYIIKEY KFKRRV
Productpolyprotein-RdRp
Descriptionpolyprotein-RdRp

Publications