Recode v. 2.0 / Database of translational recoding events.

 

Details for "r201085"

Accession numberr201085 [export]
Locus namepolyprotein-RdRp
Descriptionpolyprotein-RdRp
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismPotato yellow vein virus [details]

Sequence

GenBank IDsNC_006062
Sequencess-rna of 8035 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeUnknown (position: 0)
Description+1 (or other) ribosomal shift into +1 reading frame
CGAAAAUUAA AAAAUUUCCU UACUAUUAGC UUUUCAGCGA AAUAGUAUUU AAAAUCAACA GGUUGCCGCU GCUAGUCAGU UUCAACCAUU UUCAGAUUGC CGCUGCCAGU CAGUUUCAAU CACACAAACC AAAACAAACC AAACCACACA AGGCUUGCCA GUACCCUAAA CUGAUCUUAA UUAUGAGCCU CAUAAACAAC CACUGUGGCA AAGUGGGCAA CUCCACCCCC CUCUCCGGGA AAUUGUCGUU GUACCAUUAU ACCCCCAUAG GAAAAACCAU AAAAAAAUAC UUAAAGUGCA AUAAAAUCAG UACCAGAAAC UUUCAUGAUG UUGAAAGGUU GAAAGUGCUG UACUCGUAUU UUAAUAUUCA AAUAAGAAAG UACAAGAGGA UGCCAGCAGU AAUCAGGCAU AAAUUUGGAG CAGAUUAUUU GUCCAUCAAU AAAUUCAUAG ACUCACUAAU GCAAACUGAA GUGGGUUCUA AAGAAAAAUC UGAGCCAGUU GUUAAUGAGG UGAUUUCAGG AACCACAGUG UAUGGUGAUG GAUAUAAAGU CAUCCGAUAU GGAAAUCCUC UCUUUGUAGA UGUUUUUAUA UAUUUUAAUA GGUAUGAUGA UGAUAAUCCU GAUUUCAAAU ACAGGAUUUU GUUUUCUAAU AAAGAUAAAA AUAAUAACCG UCGGAAUGAG GUCAUGUGUU CCGUGGACCA UAAAGUCGGC GAAAUCAAAG AAUUCUGCCG CAAAUUUACU CUAUUCUCGA GUCUGUCCAG CAACCAGUUU CAAGCUCAAU GCUUACUGCU GUCAGUAGUA GAGAAGAUCC CACAGUUCAA AAGUCUAGUA CGCUAUCAUG AGAAUAGUGU CUUCAAGACG AACAUGAAAU ACAUCAGAGA AAAAUUCAAA AGAUUGUCUG AUGAUAUGAA AUCUCUAUUG GAUAGAGGUG UCAAAGUCGG CAAGAAGAAC UCGCCGAAGA GAGAAGUCCA AACUCCAUAC AAAGCUGACU AUCCAUAUGA CGUCAAGUUG ACAAUCUCGG ACUGCGGGAA AGAACAGUUC GUGAUAAAAC ACAAAUCCGG AGAAGAAAAA CUGGUGAGAA AUGAUGGUAA UUCUCUCAAG AAUCUGUACA AUGCUACCUU AUACCAAGGG UACUACAUUC UCCACGAAGC UGCGAGAACA CCAUUCGGCU CCAGAUUCAA GUCACACCAG AAUGAAUACU GCUGGAUGGA CGCCUUCGCU GUCGAUGGAA GGAAGAUUCC AGAUCGCGUG AUACCAUACC CUAGACUCAA GUUGAGAUAU CUGCUUUCAU UAGGUAUGGG UCAUAUACUA CGUGGAAAGA UGGAGGUCAU CAGUGAUAAA AUUGUUCACU UCGACCCACG UAUAUCCCGC AACACUAAGA AAGUCAACCC AGAAUUCAUG GUUGGCAUGA AACUAGAUGG AUCAGCGGGA AUAAGCACUG GCAAUUUAGA CACAUUCUUU GACGAUAUAU GUGAUGGCAU CAUGCAACAG ACCACCGUUA GAGCGGAGAA UGAUCUGACU ACUAAUGUUA UCAGACGUGU AUCGAACAUG CUGAAUGAGA AACUUUCAGU CAAACGUGAA CUGAUAGUAA AAGUAUGUCU GACUUCAGCU GAGAAGAAGA UGUUGUGCGA AGUAUUUCCA GACAUUGUAA UUGGUUUUGA AGAUAAGUCU UACUCGUCCC AUGCGUUGUU CACAGCCAUG AGAGACUGCG AAAAUUUUUA CACGUCAAAG AAGUUUUCUU GUAAGAACUU UAUUGACGCU GGAGGUGACG UAGUACGCUA CCUGAAAACA GAUGCCAGAC ACGUGCAUGU CUGUGCUCCU GUGGUUGACA UAAAAGACUC AGCUAGGCAA AUGCGUCGUA GUAGUCAGAU CGACAACCUA CGAGGGGUGA CUGAGACCAU CACUAUGUGC AACAAAUUGU GCCAAGACUG CGAUGUGGAA UCACAGAAUA UAGUCGCCGU CCAAGUUUAU GAUAUGAGCC UGAACGAUAU GGCAGAUAGC AUUAGGGCUC AUAAAAGUAA AACAUUCGAC UUCUCAAUUA UAAUUCCGCC AGAGAUAAUG GAAGAAGAUU GUGAUGUAAA UUUGUUUAAU GGCAGUCUGA GGGUGAAGUC AGAAAAGGAC AAGAUUCACU AUCUGUACGG CAAGGCUGGU GAAGUAUACU CUCAUGAUAU ACAACCACUG AGAGAUUUCU UGCAAACUCA GAUUUUCUGU AGACAUGGGG UUAUAUACAA AAAGACUCUG GAGAUGUCUC GUAAUGGAUU GCACUUCUUU UCAGUGAUAC CGUGUGAGAA CUUCAAACCC GGGACAUAUU CAGUAUCAAC UUACUACUCU AAGUCCGAGA CUGGCACCGU GCUUAUGAGC AUACCUGAUA AAGACAGAUU CGGUGAAACU GUCAACCAUA AAGUCAGAGU UGAUAGAUCU AUAGUAACCC ACCUGAUAGA AUAUGUCAUG AACUCAGCUC UCCGUGUAGA UGACAAAGCU GUUGAAUACU UGAUAUCUCA AUUCCGAUCU AGGAAGAAUA UAUCUAUCAA AGGGGGUAAA GUGGUGCAGA UACCGUUCGA CCUUCCAAUG AACUUAUAUC CAGGGUUCCU AGGGAUCAUU UUGGGUGAAG GAUUAAGGUU GAGAGAAAAG UCAAUGUACU UUGCUAAGGU UAGUUAUUAC AAACAUUACA UGCCCUCAAU AUUUGUGGUC AUCAUGGCAC UACUCAACCG AUUAAUUAAC ACUGCUAGGA GGAAUGCCUA UAAAGUAUGC UUGAGUGUGU UACGCUCCUU UUGUUCCGAA GAUUUCAUUA ACGAUAUGAU AUUUGGAGAC AAAAGAAUUC GGGAGCUGGA CGAGAUUGUU GAAUUCAAAC AGACCAUAAC UGUGAUUGGA GAAAAAGGAG UUCAAAACGU UAUGAAGAAC UCGCUUGACA GAUUCAUCAA AGAAUCCGAU GAACGGAUUU UUGAUGUGGA CAAAAAUUUA UAUCCAAUUG ACGAAAAGUU UUCGCAUGAU GAGUAUGAAG UCAUGAGAGA AUUGAUCUCA AGUGGUGGUG GUGCGUCAGA AGGUUUUCAG UUCAUAGAUU UCAGUGCUUA CUCAAAAAUC UUCAACUGUG UUUCAAAAGU CUUUAGUACU CCCAAAGCAG UUAGUGAUGU CGCAGGUCUC AUCAGCAAGU UGAUAUCGUA UCUCCUGACA AAGGGUCUAA AUACCUUGAC UGGGAUCAAA GAACUCAUAA UUUCAUUGAU CAAAAUGAUU CGGAAAGGGG UGUCGUCUGG GUCAGAAGCG UUGAAAGGUG UUAUAAACAG AUGCAAAAAU AGAGUAAAUA AUAUGGUCAA GAACAAAGAA GAUGACAUCC UCAACAAACU CGAAAAGUUC UUGGAGGAAG AUGAUGAAGU AGAUAAUACU AAAUCGUCUU UAGUUCGCAG AAGGGUAAAA ACUCCACGUA AUUCGGUGAG UAAUAGCAAA GAACUCACAA ACAGCACUGU GUUGGUGAGU AACUUGCUUU ACAAAGAUGG GAAAUAUCUU CUUGGUACUU ACAUCACGCA GACUCCGAAA UGGUUUAGCU UUGACAUUCC AUCAGUGAAC AAAUUCGAAG AAGAACAGAC AGAAAGCCUA UUAGAUGAUU AUUUGAACAC CUCCUUUGAU CUGGUGUCUC UAGGCGGGGG UAGUAAGAUC UCACCAAUUG GAAAAUUUCU UCAAAAACUU CGCAUUUUAU UGAAGAAAUU GAAAUUGAGA GUCAUUCAGA UGUAUCGGAG AUCGUUUGAC AUUUUUGAUG GUUGCAAGGA GAUUUGUGUA GAUGGAAUGA AUUUGCUAAA ACUCUUCUUU CUCGACACAG AUACGAUAGA CUUGCUGAUC AAAGGGUCUA GCUGUAUCCU UUCAUAUGUC AUCACAAGUC UCAUCUUUGG UGGCUUCAAA AUAAGUAAGG UGCUAUUCAU GACCUUAUUC GUAUUCUCUA UAAAGCUUUC GGGAAUAGAG AAGAAAUAUA UAGGUUACGA UUGGAUAACU UCUCAAUUAU CAGAUAACUU GUUUGCCGGA CAUCUGAGCA AUCUGAGUUA CAUUCCAACG AAAUUUUUGU UUAGGAGGUA UAUUGAAUCU AAAUUGAAAG UUUCUGGUUC AAAAUCUGCG AUUAUAUCUG AGCAAUGUAA AGAUCUUAUA GCCAAAGAUU UGGGUUAUAG AAAAUAUGCU GAAUAUGUGA CACCGAACAU GAUAAAGAUC AUUGGUAUGA UCUCACUGAU GUUCAGCUUG AACUUCCCGA UCUUUACUCU CAACAUGAUU AUUAUACUGA CAUUACUGAA UGACUUGUCA AAAUAUCUGA AGACAGUAGU UGUCAACAUG AAUAUCCACU UGAGUUACGC UUCAAUUCUU GAGAAGUCCA ACAGUUCAGA GCGAUUCAGA AAAUUGAAGA AUAUACUGAG ACAUAAAUUC GAAACCAAGA AGAAAGAGGA UUCAAUGCGA GAUGAAGAUG GCUUUGAUCC GCAAACUAGA GUGGGUUUCA AACAAGACUC CAAUGAUGAG GACAUUGAAG UAGUUUUCGA CUACGAUGGA UCCUAUACUG AGACCAGGAA ACCGACUACC UGUAAUGCAG CUAGUACCUC CGGGAAGAUA GAUUGGGCCG ACCUUGAAAA CGAUUCCGUA GAAAGUUUAG AUGAUGAAAA GCUUAACUUC UCAAAGUUAG UACCUACUAG UGAUCGAAGU AGAAUUUGUC CGAAGACACA AGUUGGAUUG AGUAACGUGA UUUUGACUUA UCCAUCAUCC GCUUCAGUGA UGUUUUUGGA AAGUACCAAU GAAGUGACCA ACUGUCUUAA UGAGUUCUAC UAUCUAGAGA CACAGAGACU GUCAAUUGAA CUUGGGAAGA UUGAUAAAAU CUUGUCAAGA ACAUUCAACA GUAUAUACAA UGAAUCAAUG AAGUUUAAAG AUGCGGUGUG GCAUCUUCGU AACAGAAUGG AUGAUUCAAC AAUAUACAUU UCAAAUAACG GUAAGGAAUG GCACAGAUUG AAAAGAGGAG AUGUGGAUUU CAAGUUAUUG GAGGGAAGUA CAAAAUUCGA CUUGAACCAG AAUAUGAUUG ACUUUGAAGA AAAGACUCCC GGCGUUCAGA UUACGUCCGA AGAGUUUCUC GGGUUGUACA CUAACAAUAA AUGUUUAGGG AUAGAAUCGA UCAUGUCAAG UCCAGGGAAA UUCCCAGGAC UAAAGCGGAG AGAUAAUGUU AUAAUUUAUA ACAAACCUCC AGGAGCUGGU AAAACCACAA CAAUCGUCAA UAACUUGUUG AGGGACAUAA ACAACAAGAA AAGAAGUAUU GCGUUAACAA GUACUUCGGC UGGGAAGAGA GAGAUAGCCC AAAAAUUAAG AUUGAGGGGU GUGAGGCAAG CACAUUCUUA UGUUAGAACG UAUGAUGCUG UACUCAUAAA AGUGGGUAGG AUGAAACUGG GUGUGCUAUA UUGUGAUGAA UGUUUCAUGA UACAUAGCGG UCAAUUUGUA GCUGUUACAG AAAUUAUAAC AGCUGACAGA AUGGAAUUAU AUGGUGAUAA AAACCAAAUC CCAUAUCUCA AUAGAGUGCC GAACACUACC AGCUUGUAUU CCUUCAACCA CUUUCUUCAA UACGAUAUGG UUCAUGAUGA CAAGUCCUAC AGGUGCCCAC CUGACGUAUG CUACAUAUUG UCUAACUUGA GGAAUUCAUC UGGAGAAUUA UUAUACCCAA AAGGUGUGAA AUCUGUUAAU AAGAACGCGA ACAUUUUACG CUCGAUGGAA GUACUGAAAU UCGACAGUGU GAAUGAUCUA GAUGGUGAAG CAGGGAGGAA GUAUGUGACA UUCACUCAAC CUGAGAAAGA AGAAAUCUCG AGGAUAGUGU CGAGGAAUAA GAAAGAAUCU GAUACAGCUA ACACAGUGAA UGAAGUCCAA GGAGGGACCU UUAAGACAGU GGAGCUAGUC AGAUCUAAAC AAUAUGACAA CCCCAUAUAC AGUGAUAUCA AUCAGUUCAU AGUGAGUAUA UCACGCCAUA CAGAGUCUAU GAGAUAUCGU ACCAUUCAUU CAAAGCUCAA UGAUUUCGUU GGAGAAAAAA UCAAUGCUUU GUCUACUGUG UCUGAUCACG UUAUAAAAGA GUACUGUUUU AGACAGCGUG UUUGACGAAU AUAGGAUAGA GGUCGAUGUG UGUCGCUUUG GUAACACCUU GAGCAGAGCC CCGUCCUCAC AUUUUGUUGC CGUGAACGAA UUCAUGGAAU UGAUAAAUCC UGGUUUGAGU GCUCACGAUU AUCUGUAUCG AACUCUACUA UACGAGUACG AACAGUAUGA ACUCCCAUUU GUGGAUGAUC UGACUUUAGA UAUCACGAGA AGUGCACCGU ACACUUCUGG GGAUUUCUUA GUACCUAAAA UUUUAGGUAA AGGAGAAAGG ACACGACCAG ACACUUGGAA ACAGGUGCUU AUUUCCCUUU CUCACAGAAA CUUUUCAGCA CCGAGGAUAA ACGAGAGAUU CGAUAAUGUC AAGACGGCAG AAAUCUUAAG UAAAAAUUUA AUCGGAUGCA UGAAGUUGGA GAGACUAUAU GAGAAUUUCG AUCCGGUUCU ACCAGACCUA AGACGUGUUG AUAAAUGGUU GAUAUCAAGA GAUCCAAAUA AGUUGAGGAG AUUGUAUCGU UCGUUCUCAA CCGAUUUAUU AGUCAACAAA UUCAAUGAUC UCAAACUGAU GGUUAAAGGG UCCAUGAAGC CUAAGUUGGA UACUUCUUCU UAUAGCAUGU ACACACCACC UUCCAAUAUU GUGUAUUAUG AGCAAGUGGU UAACAUGUUU UACUCACCCA UAUUUUUGGA GGUCUUUGAG AGAAUCAGGU AUUGUAUGAA UGAUAAGAUU GUUAUGUACA GCGGAAUGAA CCUAGAAACA CUUUCCGAGA UAAUAAGUUG CAAAUUAACA AUGCCUUUGA AUGAGUACUA CACCACUGAA AUAGAUUUUU CAAAGUUUGA UAAGUCGCAA GGUGUUGUUU UCAAACUAUA UGAAGAAAUG GUCUACAAAU UCUUCAAAGU UUCAGAAGAU GUUUAUGAGA AUAUAAAAUU CUCAGAGUAU UUUUGCAGAG UGAGAUCAAG AAGUGGUAUU CAAACUGAAC UAGGAGCUCA AAGGAGGACA GGAUCACCUA ACACAUGGUU GUCCAACACA UUAACAACCA UGGCUGUUGU CUUAUCAUCU UAUAAUUUAG AUGACGUUGA GCUAUUUUUG GUUAGUGGUG AUGACAGUUU GAUAUUUUCA AAGUAUCCAC UCGAUAACAG GACUCAAAGG AUGAAUGUGG ACUUUGGUAU GGAAGCGAAG UUUAUUGAGA AUUCUGUACC UUACUUCUGC UCAAAGUUCA UUAUACAAGA UAGGGGAAGA AUUAAAGUCA UACCAGAUCC AGUAAGAUUC UUUGAAAAGU UGUCUGUACC UGUGUCAUAU CAAGACUAUG AAAAUUGGAA UAUGAUUAGA GAGAGAUUCA UUUCAUAUAA AGAUCUGAUG GUGGAAUUUG AUUAUGACAC GAGUUGUAUG UUAGUAGAUG UAAUGGUGUC AAAACGGUAU UCUUUACCGA AUAUGGCAUC UUAUGCGGCA UUGUGUUACA UUCACUGUUU AUUAGCCAAU GCUCAAUCUU UCAAACGAAU UUAUUUGGAU UCGAUAUUAG UGUCGAUAUG AAUGGAACUG UUCCAAUAGU UAUGAAAUUC UGCAUUAGAA AGGUCGGAGA AUGUGGUGAA GAUGAAGUGU UUAGAGAUAG AUUCAGUUAC AUAAUGAUAG UGUAUUGUUA UGUUUUGAUG GUAGUUCUAG CUGUAGCACU GUGUUUGAUA CCUUGUAGUA AAGCUAUCAA ACAAUUCUUA UAAAUAGUAU GAAUAAAUAA UAAUAUAAUA AUAUAAUUUA AUAAUAUAAU AAAUAAAAAC CGGGUAAUUU UGCUUAAUAU UUGUUUACCC GAGGUCUAGU ACGGAUGAGA UGUCCAGUGU ACUUGAUAAA UCCUAAAACU AUAUAUAGUA UUCUAAUCUU ACGUUUGUUU AGACAGUAUA AUUAGAAUCG GUAGAAAAGA UGGUUUAAAC CACGCCUUCU ACCAAGUUAG UAAAUAAAUA GGCGG

Products

Productpolyprotein
Descriptionpolyprotein
MSLINNHCGK VGNSTPLSGK LSLYHYTPIG KTIKKYLKCN KISTRNFHDV ERLKVLYSYF NIQIRKYKRM PAVIRHKFGA DYLSINKFID SLMQTEVGSK EKSEPVVNEV ISGTTVYGDG YKVIRYGNPL FVDVFIYFNR YDDDNPDFKY RILFSNKDKN NNRRNEVMCS VDHKVGEIKE FCRKFTLFSS LSSNQFQAQC LLLSVVEKIP QFKSLVRYHE NSVFKTNMKY IREKFKRLSD DMKSLLDRGV KVGKKNSPKR EVQTPYKADY PYDVKLTISD CGKEQFVIKH KSGEEKLVRN DGNSLKNLYN ATLYQGYYIL HEAARTPFGS RFKSHQNEYC WMDAFAVDGR KIPDRVIPYP RLKLRYLLSL GMGHILRGKM EVISDKIVHF DPRISRNTKK VNPEFMVGMK LDGSAGISTG NLDTFFDDIC DGIMQQTTVR AENDLTTNVI RRVSNMLNEK LSVKRELIVK VCLTSAEKKM LCEVFPDIVI GFEDKSYSSH ALFTAMRDCE NFYTSKKFSC KNFIDAGGDV VRYLKTDARH VHVCAPVVDI KDSARQMRRS SQIDNLRGVT ETITMCNKLC QDCDVESQNI VAVQVYDMSL NDMADSIRAH KSKTFDFSII IPPEIMEEDC DVNLFNGSLR VKSEKDKIHY LYGKAGEVYS HDIQPLRDFL QTQIFCRHGV IYKKTLEMSR NGLHFFSVIP CENFKPGTYS VSTYYSKSET GTVLMSIPDK DRFGETVNHK VRVDRSIVTH LIEYVMNSAL RVDDKAVEYL ISQFRSRKNI SIKGGKVVQI PFDLPMNLYP GFLGIILGEG LRLREKSMYF AKVSYYKHYM PSIFVVIMAL LNRLINTARR NAYKVCLSVL RSFCSEDFIN DMIFGDKRIR ELDEIVEFKQ TITVIGEKGV QNVMKNSLDR FIKESDERIF DVDKNLYPID EKFSHDEYEV MRELISSGGG ASEGFQFIDF SAYSKIFNCV SKVFSTPKAV SDVAGLISKL ISYLLTKGLN TLTGIKELII SLIKMIRKGV SSGSEALKGV INRCKNRVNN MVKNKEDDIL NKLEKFLEED DEVDNTKSSL VRRRVKTPRN SVSNSKELTN STVLVSNLLY KDGKYLLGTY ITQTPKWFSF DIPSVNKFEE EQTESLLDDY LNTSFDLVSL GGGSKISPIG KFLQKLRILL KKLKLRVIQM YRRSFDIFDG CKEICVDGMN LLKLFFLDTD TIDLLIKGSS CILSYVITSL IFGGFKISKV LFMTLFVFSI KLSGIEKKYI GYDWITSQLS DNLFAGHLSN LSYIPTKFLF RRYIESKLKV SGSKSAIISE QCKDLIAKDL GYRKYAEYVT PNMIKIIGMI SLMFSLNFPI FTLNMIIILT LLNDLSKYLK TVVVNMNIHL SYASILEKSN SSERFRKLKN ILRHKFETKK KEDSMRDEDG FDPQTRVGFK QDSNDEDIEV VFDYDGSYTE TRKPTTCNAA STSGKIDWAD LENDSVESLD DEKLNFSKLV PTSDRSRICP KTQVGLSNVI LTYPSSASVM FLESTNEVTN CLNEFYYLET QRLSIELGKI DKILSRTFNS IYNESMKFKD AVWHLRNRMD DSTIYISNNG KEWHRLKRGD VDFKLLEGST KFDLNQNMID FEEKTPGVQI TSEEFLGLYT NNKCLGIESI MSSPGKFPGL KRRDNVIIYN KPPGAGKTTT IVNNLLRDIN NKKRSIALTS TSAGKREIAQ KLRLRGVRQA HSYVRTYDAV LIKVGRMKLG VLYCDECFMI HSGQFVAVTE IITADRMELY GDKNQIPYLN RVPNTTSLYS FNHFLQYDMV HDDKSYRCPP DVCYILSNLR NSSGELLYPK GVKSVNKNAN ILRSMEVLKF DSVNDLDGEA GRKYVTFTQP EKEEISRIVS RNKKESDTAN TVNEVQGGTF KTVELVRSKQ YDNPIYSDIN QFIVSISRHT ESMRYRTIHS KLNDFVGEKI NALSTVSDHV IKEYCFRQRV
Productpolyprotein-RdRp
Descriptionpolyprotein-RdRp

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