Recode v. 2.0 / Database of translational recoding events.

 

Details for "r201087"

Accession numberr201087 [export]
Locus namepolyprotein-RdRp
Descriptionpolyprotein-RdRp
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismBlackberry yellow vein-associated virus [details]

Sequence

GenBank IDsNC_006962
Sequencess-rna of 7801 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeUnknown (position: 0)
Description+1 (or other) ribosomal shift into +1 reading frame
CGAAAAUUCU CUUUGUUUUC CUGUGCUUUU AGCAAUUCUG CGAAAAAGCA AUUGAAAACG UUCCCGAGCU UGUUGCAUUA UUGCACCCAG CUCAACCACC UUUACUACGG GUUUAUUGCA UUAUUGCAAU CAACCUAUCC ACCCCUAUCA CCUACCCCAA CAACAAAUCC AAAAUCACAU CAACCCUGCC AGUAAUUCAA CAUAAUUAGA CAUAAUCAAC AUUUACUGUU GUGUUGUCGG CGUGGGGCCA AAUUAUACGA CUGUUUGAAG GGCUCAUCAA ACAGUGAAAG AUGCCUUUGA AAGGUAAGCU UACCCUGUCC CCUUAUGCCC CCUACUAUUA UUGUAAGUUA AAUUUUGUAG AAAAUCAAAA AUUAAAAAUA AACAAAAAAU UUGAUAGUUC UAGAUUAAAU UUUCUUAGGU CGUAUUUUAA UUUACAUAAU UGCUCCUUCA AGAGAAUGCC AGUCCCCAUU CUCAAUAAAU UCGGUACCGA CUUCUACCGC AUUAAUAAAU UCAUAGAUGA AUCUAUGAAU AGUUUAGUUG GUACCGAAUC UCCCAAAUCC AAAGUUUUGG AGGAGACCAU CACCGGUACA ACCUCUUUCG GUGAUGGUUA CUGUGUGAAG AGGUAUUCAA ACCCUUUGCU UAUAGAUGUC UUUAUUUGCU UUGGUAGGUA CUUUGAGCAU UCUUUUGAUU UUAAGUUUAG AGUGUUUUUC CAAAAAGUUA AAAAUUCAAA AAGAGUUACU AAUUUAGUAC AUUCAGCUUU CGGGAAAAAC ACCGGUUCUG AGAUUACCUG GUGUACCCCU UUCACUUGUU UCACCCGUUU AGACAACCAA CAGUUCCAGG CUCAGUGCCU CUUGUUGUCU GUAGUUGAGA AAAUAGAUGA GUUUGGGGAA CUUCUCAACU AUUAUAAGAA CCCCGUGUUU CGGAAUCCUG UCAACAGGGU UAGGGCCAUG UUAUCCAAGA AGUACACCGC CCUUGUCAAG AUUUAUGAAC AGUCUUGCAA GGUAGGUCAG AGGAGGCCUG UGAAGAAAGC UCCGGUUAAA CCGGUUGAGA AGAAACCCUU CUGCAUUGUG ACUCAUGCUG UGGGGUAUGG AGGAGUUGAG UCUUUUUGUG UCAAAUACAG AGACGGCGGC GUGAAGACCC UUCCCAAUGA UAAAUUUGCC GUUAGAAAUC UGUUUAAUUU GAAAUGUGGA GAAGGAGGCU ACACAAUUCA UAAGAGUGCU CUAACCCCAG ACGGUUCCAG AUUUUUCAAU CAUGAUAACG AAUACUGUUG GUUGGAUGCA UUCUUCUUGG CCAAGAAGAA GAUACCCGAU UUCACCAUAC CGUAUCCCGC CAUAUCUUAC AGACAUCUUU UGUCUUGUGG GUUGGGCAAG GUCCUAGCAG ACAGAGUAAA AUUCUAUCCA AAUGGUAAAG CACACUUUAC UGCUAAGACU AUUCAGAAGG GGCAGAAAAG UAACUGGUCU GCUCUUGUUG GUGUGAAAUU GGAUGAGGAU UCAGGUAUGU CGUUGAAGAA UGUAGAUGUC UUCUUUGAUG ACAUUUGCUC UGGUAUAGUU AACCAAACUG CUCUUCGUUC UGAUAAUGAC CUUAUGACAA ACGUUGUGAG GAGAAUCUCG GAUCAGUUGA ACAGUAUUUC UUCAAGGGCA AAAGAUCUGA AAAUAUCAGU CUGCCUUAGU AGUGCUGAUA AGAAGAAGUU GUGUGAGGUG UUCCCAGAUU UAAGUCUCGA AUUCACCGAC UCUUCUUUCU CGUCACAUGC UCUGUUCACA GCCAUGCGAA GUUGUGAAAA CUUUUGUAUG UCUAAAAGAA ACAACUUUUG CAACUUUAUU GAUGCUGGGG GCGAUGUUGU GCACUAUGUU CAGAAGAGAU GUGCUGAUGU UCAUGUCUGU UGCCCUGUGG UUGAUAUUAA AGACGCUCAG AGGCAUAUGA CGAGAAGUAA UCUUUUGGAU AGAACUCAAG GGCUGCAGGA AUCUAUCACC AUUUGUGCUA AUUUAUGUCA AGACUGCAAA GUAGCCAAAC AAAACAUUGU GGCAGUUGAG GUCUAUGAUA UGACAUUGAA UGAUAUGGCG AAAGCGAUUC UGUCUCAUAA AGCUAAAAGG UUUGACUUCA GCUUGAUUAU CCCUCCAGAA AUAACUGAGU GCAGUUGUGA AGUGAAAAUG UUUGGUGACC AACUGACUGU UAAAUCCGAU GGGGAGAAGG UCAAAUAUUA UUAUGGUUCA AGUGGUGAAU GCUACAGCCA UAGUGUUGAC AACCUUCGAC ACAUUUUGAA AACUCAGAUU UUCUCUUUUG AAGGUGUUGU CUUUAAGAAG ACUUUGGAGC AGUCGAGAGA GGGGCUACAU UUCUUUUCAC UUGUACCCUG UCCAAAUAUU CUCAAUGGCA GAUAUGAAAU AUCCACCCAU UACCGCAAGU CCGAGAUGGA UAAGGUGAUG AUGAUAAUUC CAGUCAGGAA CAAAUUUGGU AUAAUUGAGA ACGUCAAGGU GAAGGUGGAU AAAUCCAUUG UGUACCAUCU UUUGGAAUAC ACAAUGAACA CUGCUUUGAG GGUUGAUGAC AAGGCGAUUG AAUAUUUGAU AUCUCAAUUC AGGGCUAGGA AGAGUGUUUC CAUCAAGGGC GGUAAAGUGA UACAAGUUCC UUUUGAUCUA CCGGUCGAUU UAUACCCUGG GUUUUUGGGU GUAAUUCUGG GAGAGGGUAU AAGGAUGAGA GAAAAGACAC AUUAUAUGGC AAAGAUGAGU UAUUACAAGC ACUAUCUUCC GACCAUCUUC UUUGUCAUAG GUGCUUAUAU CAAUAGGUGC AUAUCAUACU GCAGAGAGUA CACCUAUAAU AAAAUGAUUC AGGGUCUCAA GUGGAUCAUG UCUGAGAGUU UUAUUGAGGA GAUGAUCAAU GGAGAUAAAA GAAUCUUUGA UGUGAUUGAG GUUUUUGAGU UCACUCAAAC UGUGAACAUU GUUGGUGAAG AGAAUCACAG GAAUGUCAUG AAUGAAUCUU UUUCAACAUU CUUGAAUGAA UCCAACAAGA AGAUGACAGA GUUGGACAAA ACCUUUAAAU CUAUUGAAGA UGAGUUUAAA GACACUGAUC UCGACAUUUU GAGAGACACA GUUAUGGCAG GAGGUGCUGG UAAUAGUUGG AGAAGUAUGU UCAACUUCAA UGUGUACAAC AAAGUGUACA GCUUCUUCAA UUUCUUUGUA UCCUGCAAGA ACAAGGUCGU CAAGUUCACC AACUUUGUUU UCAAUGUCAU CAUGUACUUA GUUGGGAAGG GUAAGGAUGC CUUCGUCACU GCCAAAGAAG CUCUCAAAAG UUUGAUGUAC UCUUUGAUUG GGAAAGGGAA AAACGUUUGC AAGGACACGG UCAAACUUUU UAGGAGGGCC AGUGAUUUGA UGACCUCAAA AUUUUCAGCC UCAAACUCAA AAUGGAUAGA GGAGUUGGAA GCACUUAUAG AUGAGGAUGA GAAGGCUGAA ACCGUCACUC AAGCUGAGAU GGUUGAAAUG UUACCACUUU CAUUCUCUCC GGAAGAUGAG GAGAAAUUUG UCGCAGAGAC UGCUGCUAGC AUUGAGAGGA UGGUGGUUGA CAUUUGUACU UCAGGAGGUG GAGUCAGAAC CCCAAACUGC AUCAAAGUCU UGUGCUCAGU ACCAAGGAAA AUCUCUGAAA GAGUGAAAUU AUGUUUUAAG ACAUUGAGAG AGCAUGUUAG GGUUGUGGUG AACUGGAUCG UACUCAGAUA CUUUGAUAUA AUUGAGAUUC CAUCCUUGAU CAAAGAGUAU UAUGAGUAUG CCUUUAAUGU UUCGAAAGCU UUCAUCCUAU CUCCCGAUGG UCUUAGCAUU AUAAUUCAGG GGUCGGCCUU UUGUCUCACA AAUAUGCUUU UCAUGGCCAU AGCUGGUGAC UUUUCAAUGG UUGGUCUUGU GCUUUCUGGG UUGGUUCUUA UUGGCAUAAA AACUCUUGGU UGGGAGAAGA AAUAUUUAGG AAAUGGUGUG GUGUCUUCAC AAAUCGCUAG UUCUUUAUGU UGGACCUUCC CUUUUGGUGU CAUGAGCAUC CCAGUCAGAG CUUUAUUGUC GAACUUCAUA GAGUCGAAGA UGAAAACACA CAUGCUCACU AAUGACACAU UGAAAGAACC AGUGAGAGAC UUGGUGGCUA AGGACGUAAU CACUUACAAG GCGUUCGAGA AAGUAACAUU CAGCACAAUC AGACAAUGCA UAUAUGCUGU GUUACUGGGA AUGAUUUUUG CUCCAUCAUU UUGCAUGACC AUUCUCAUCU GUUUACUCUU UGUCAAUGAA CAUAAGAAGU ACUUGAACUC AGUUGUUCUG CAGACCAACA UCAGAUUGAG UUUUGCUGAA GUUUUGAGAA AAACUGCUAA GAGUGACAGA UUGAACACCU UUAAGUCGUU GGCGAUCAGA AAAUUCAAGA AUUCGAACAU AAAAGAUGAC UCGGAUUUGC AUGCUGCCGA CACAAGAGUC GCUGGGGAGG GGAAGAAAUU UGUUGAUGAC AUGUCAGAUG UUGAGGUUGA AUUUGACUAU GAUGGAUCUU AUAAAGAGAA AUCAAAGAUU UUGAGUGAAA AGAGAUCUAG UAGUUCAAAA CCUUCAACCA GUCAGAAGAU UGUAUGGGCA GAUACAUCGG AAACAUCCUC CUUGAGUGAG AAUGCUGAGA GCUUAAAGUU UUCACAUCUG ACUCCUUCUA CAGAUAGGAG GUACAUAAAU UGUCAUGUAU CUUUUGGCUU GAGCAACAUU AUAUUGACAU AUCCUUGUUC CAGUCUUCUU CAAUUGAUUG AAACAGAAGA UAUUAGAUUG AAUUCUAUAU CUGAAUAUUA UUAUCUUGAA GCCCAAAAAC UUUGCAUAGA AUUGGGAAAG AUUGAUAAUG CAGUUAGGAU AUUCAAUUCU AAGCAUUCUG ACAGGAAGAC UUUUAAGGAU GUUGUCUGGG ACAUGCGGAA UAUGAUUGAU GAUGCCACCA CAUACAUAUC UGAGAAUGGA AAGAAGUGGU AUAGAUUGAA GAGGGGGGAC ACUUCAGCGA AAGCCUUGGA AGGUAUGUCA AAAUUUUCGC UUGAUCAACA UCUAACCGAU UUCAAUAGUG AUGUUAAAGG UGUACAGUUU ACCAGUGAUG AAUUUCUUGG UAUGUAUACC AAUAACAAAU GUUUGGGGUU AGAAAAAUUU CUUGAUGAGG AGGGAAAGUU UGUGCUCAAA GAGGAACACA AAAACGUUCG AUUCUUUAAC AAACCUCCGG GCGCAGGUAA GACCACCACC AUUGUUGAAA ACAUUGUGAG GGAUGUUAAC UCUGGUAGGA AAUGUUUGGC UUUAACUUGC ACUUCAGCUG GUAAGAAGGA GAUCAUUCAC AAAUUGAGAG CUAAAUCUGU GGUUUCACCU CAGAAUUUCG UUUCCACUUA CGAUUCUCUC CUGAUGAAUG GUAACAGCCC UGUGAUUGAA AAUUUGUACU GUGAUGAAAU CUUCAUGGUC CAUUGUGGUC AAUGGUUGGC UUGUUUGAAC CAAGUGGAGU GCAGUUAUGU UGAGUGUUAU GGUGAUAAAA AUCAAAUCCC UUACAUCAAU CGAGUGCCGA ACACUAUCAG CAGAUAUUCU UUCCAGCAUU UCAUGGACUA CCCUAUGGAG CAUGAUAAUA AAUCGUAUCG GUGUCCUCAA GAUGUUUGUU AUCUGUUGUC AAACCUCAAA GAUGUGACUG GUGAGUUGCU CUAUCCAAGA GGUGUUUAUG CUGCCGGGAA GAAUGCAGAU GUGAAUAGAU CCAUGUUUGU UGAGAGUAUG CAUUCUUUGG AUGAUGUAAA AUUUGACAAG GAUUGUAAAU ACAUUGCCUU CACACAACCA GAAAAAGAGG AGAUUUCUCG GUCCGCUUCA AAUGCCUUUA AGGAAUCUUU UAGUGCUAAC ACUGUGAAUG AAGUUCAGGG UGGUACUUUU CCAGAGGUAA AUCUACUGAG AAUAAGGCAG UAUGAUAAUC CAAUAUACUC CAACAUCAAC CAAUUUGUGG UUAGCAUUUC CAGACAUACA GAUCGUAUGU GCUACCGCAC UGUUCCAAGC AAGUUGAAUG ACUUUGUUGG GGAGAAGAUU UCAGCUUUGU CAACUGUCUC AGAUUAUGUC AUCAAGGAGU ACAAAUUUAG ACAGCGCGUU UGACAGUUAC AUUCUGGAGG UUGACAGCUU GAAAACUGCC UUGACCUAUA GUCGACCUUC AGCUUCUCAU CACAGAGCCA UAGGUGAGUU UAUGAUGUUG AUCAACACAA AUCUCAGUGC UUAUGACUAU AUUCACAGGA CUCUACUUUA UGAGUUUGAG GACUAUGAGU UGCCUGUUGU UGAAGAUUUG GAGUUGAGCA UUUCUAGGAG CAAAGCAUAU CAACCUGGAG AGUACAUCAU UCCGGAUUUG UUGGGUAAAG GGGAGAGAUC UAGACCUAAU ACUUGGAAAC AAGUCAUUCU GUCUCUGUCA CACAGAAAUU UCAGUGCUCC CAGGAUCAAU GAGAGAUUGG AUGUAACAUC UUCAGCAGAG AGAUUGGUGC AAAGUUUGAU GAAAUGUUUU GAGUUGUCGA AACUUGCCGA AAACUUUGAU UUAAUUGUAC CAGAUCUCUA CAGGAUUGAU AAGUGGUUGG AGACUAGGGA UGGUGAGAAA AUAAGAAAGU UGAAAAGAAG CUUUUCCCAU AGUCUUAUGA UCUCCCAGUU UGAAAGUAUG AAGUUGAUGA UCAAAGGAGA GAUGAAACCG AAGAUGGACA CGUCCUCUUA CAGUACUUAC AAUCCCCCGG CUAACAUCAU UUAUUAUGAG CAUGCAAUAA ACAUGUUUUA CUCGCCGAUG UUCUUGGAAG UUUUUGAUAG GAUCACAUAU UGUCUUAGUA AUAAGAUAAU UUUGUAUUCU GGAAUGAACU UGGAGACACU UGGGAGUUUG AUUCGCUCAA AAUUGCCUCU UCCCUUGGAU GAGUACAAGA CCGUGGAAAU AGACUUCAGC AAGUUUGACA AAUCUCAAGG UGUCUUGUUC AAGGUGUAUG AGGAAAUUGU UUAUAAAUUC UUUAAGUUCU CAGAGGAGUU GUAUGAGAAC AUCAAGAUGA CCGAGUACUU CUGUCGCGCU AAAAGUAGGU CUGGUGUAUC UUUGGAGCUU GGAGCUCAGA GAAGGACUGG UUCACCUAAC ACUUGGUUGU CGAAUACUUU AGUUACUUUG GGUAUAAUCC UGUCGACUUA UAAGAUUGAU GAUAUUGAUC UACUGCUUGU CAGUGGAGAU GAUAGUCUCA UCUUUUCUAA AGAAGAUUUG CCCAAUUUAG CUAACCAGAU AAAUCAGGAC UUUGGUAUGG AGGCAAAAUU CAUUGUAAAU UCAGUACCAU ACUUUUGUUC UAAAUUCAUC AUUGAGGAUA GGGGGGAAAU CAAAGUUGUG CCUGAUCCAG UGAGAUUCUU UGAAAAACUU UCAGUGCCCA UCAGGUUAGA AGAUUUUCUG AGUGAGACUU UGCUUAAGGA GAAAUAUACC UCAUUUAAAG AUCUUAUGGU CUUUUUUGAU UCCGAUACAG UCUGUGUGUU GGUUGAUAGA UUGAUCUGUA UUAGAUAUGG UAUUCCUGAG AUGUCUUCCU ACUCAGCAUU AUGCUACAUU CAUUGCUUAC UGGCAAAUGU ACUUUCCUUU AAAAGAUUGU AUACCGAUGC AAUGACUGUG GUAAUUUAAA UUUUAAAAAU AAAAUAAGGU UCUUUAUUCU AUAAAUUAUA ACCUUAGAGU CAUAUACGUA UGAAUAUGUA GUGUGUAUUA UAAAAUCUCA AAAAUACAAA AAGAUGUGUU CUAUAGUUCU UAGUUAGCGU AGGAUAUAUC GAUGUGGUAA AUAGUGUUUU UAAACACUAG CCUUCCACAU CUAGUAUUAA UAAUAAUGGC G

Products

Productpolyprotein
Descriptionpolyprotein
MPLKGKLTLS PYAPYYYCKL NFVENQKLKI NKKFDSSRLN FLRSYFNLHN CSFKRMPVPI LNKFGTDFYR INKFIDESMN SLVGTESPKS KVLEETITGT TSFGDGYCVK RYSNPLLIDV FICFGRYFEH SFDFKFRVFF QKVKNSKRVT NLVHSAFGKN TGSEITWCTP FTCFTRLDNQ QFQAQCLLLS VVEKIDEFGE LLNYYKNPVF RNPVNRVRAM LSKKYTALVK IYEQSCKVGQ RRPVKKAPVK PVEKKPFCIV THAVGYGGVE SFCVKYRDGG VKTLPNDKFA VRNLFNLKCG EGGYTIHKSA LTPDGSRFFN HDNEYCWLDA FFLAKKKIPD FTIPYPAISY RHLLSCGLGK VLADRVKFYP NGKAHFTAKT IQKGQKSNWS ALVGVKLDED SGMSLKNVDV FFDDICSGIV NQTALRSDND LMTNVVRRIS DQLNSISSRA KDLKISVCLS SADKKKLCEV FPDLSLEFTD SSFSSHALFT AMRSCENFCM SKRNNFCNFI DAGGDVVHYV QKRCADVHVC CPVVDIKDAQ RHMTRSNLLD RTQGLQESIT ICANLCQDCK VAKQNIVAVE VYDMTLNDMA KAILSHKAKR FDFSLIIPPE ITECSCEVKM FGDQLTVKSD GEKVKYYYGS SGECYSHSVD NLRHILKTQI FSFEGVVFKK TLEQSREGLH FFSLVPCPNI LNGRYEISTH YRKSEMDKVM MIIPVRNKFG IIENVKVKVD KSIVYHLLEY TMNTALRVDD KAIEYLISQF RARKSVSIKG GKVIQVPFDL PVDLYPGFLG VILGEGIRMR EKTHYMAKMS YYKHYLPTIF FVIGAYINRC ISYCREYTYN KMIQGLKWIM SESFIEEMIN GDKRIFDVIE VFEFTQTVNI VGEENHRNVM NESFSTFLNE SNKKMTELDK TFKSIEDEFK DTDLDILRDT VMAGGAGNSW RSMFNFNVYN KVYSFFNFFV SCKNKVVKFT NFVFNVIMYL VGKGKDAFVT AKEALKSLMY SLIGKGKNVC KDTVKLFRRA SDLMTSKFSA SNSKWIEELE ALIDEDEKAE TVTQAEMVEM LPLSFSPEDE EKFVAETAAS IERMVVDICT SGGGVRTPNC IKVLCSVPRK ISERVKLCFK TLREHVRVVV NWIVLRYFDI IEIPSLIKEY YEYAFNVSKA FILSPDGLSI IIQGSAFCLT NMLFMAIAGD FSMVGLVLSG LVLIGIKTLG WEKKYLGNGV VSSQIASSLC WTFPFGVMSI PVRALLSNFI ESKMKTHMLT NDTLKEPVRD LVAKDVITYK AFEKVTFSTI RQCIYAVLLG MIFAPSFCMT ILICLLFVNE HKKYLNSVVL QTNIRLSFAE VLRKTAKSDR LNTFKSLAIR KFKNSNIKDD SDLHAADTRV AGEGKKFVDD MSDVEVEFDY DGSYKEKSKI LSEKRSSSSK PSTSQKIVWA DTSETSSLSE NAESLKFSHL TPSTDRRYIN CHVSFGLSNI ILTYPCSSLL QLIETEDIRL NSISEYYYLE AQKLCIELGK IDNAVRIFNS KHSDRKTFKD VVWDMRNMID DATTYISENG KKWYRLKRGD TSAKALEGMS KFSLDQHLTD FNSDVKGVQF TSDEFLGMYT NNKCLGLEKF LDEEGKFVLK EEHKNVRFFN KPPGAGKTTT IVENIVRDVN SGRKCLALTC TSAGKKEIIH KLRAKSVVSP QNFVSTYDSL LMNGNSPVIE NLYCDEIFMV HCGQWLACLN QVECSYVECY GDKNQIPYIN RVPNTISRYS FQHFMDYPME HDNKSYRCPQ DVCYLLSNLK DVTGELLYPR GVYAAGKNAD VNRSMFVESM HSLDDVKFDK DCKYIAFTQP EKEEISRSAS NAFKESFSAN TVNEVQGGTF PEVNLLRIRQ YDNPIYSNIN QFVVSISRHT DRMCYRTVPS KLNDFVGEKI SALSTVSDYV IKEYKFRQRV
Productpolyprotein-RdRp
Descriptionpolyprotein-RdRp

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