Recode v. 2.0 / Database of translational recoding events.
Details for "r201113"
| Accession number | r201113 [export] |
| Locus name | fdhA |
| Description | formate dehydrogenase |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Aeromonas salmonicida [details] |
Sequence
| GenBank IDs | |
| Sequence | DNA of 2145 nucleotides [sequence] |
| Organisation | SECIS structure (1)
|
Recoding event
| Event type | Selenocysteine (position: 418) |
| Description | Selenocysteine incorporation at UGA codon. |
ATGAAAAAAG TCATTACCGT CTGCCCCTAT TGCGGCACCG GTTGCAAGAT CAACCTGCTG GTTGAAAACG
ACAAGGTGGT GGGGGCCGAA GGCGCCAACG GCCGGACCAA CGAGGGGCAG CTCTGCCTCA AGGGTTATTA
CGGTTGGGAT TTCCTCAACG ACACCAACCT GCTGACCCCC CGTCTCAAGA GCCCGATGAT CCGCCGCGAG
CGCGGTGGCA AGCTCGAATC CGTCTCCTGG GATGAGGCGA TCGACTTTGC CAGCAGCCGT CTGTCTGCCA
TCAAGACGAA GTACGGTGCC GACGCCATCA TGACCACCGG CTCGGCCCGT GGCCCTGGCA ACGAAGCCAA
CTATGTGATG CAGAAATTTG CCCGCGCTGT GCTGGGGACG AACAACGTCG ACCACTGCGC GAGGGTGTGA
CACGCACCCT CAGTCTCCGG TCTGGAGACA ACTGTAGGCA ACGGCGCCAT GAGCAACGCC ATTCCCGAAA
TTCAAGAGAC CAAGTGCCTG CTGGTGTTTG GTTACAACGC TGCTGACTCT CACCCCATAG TCGCCCGCCA
TATCCTCAAG GCGAAGGCGA ACGGGGCCAA GGTGATTGTG TGTGATCCCC GCATGGTGGA AACCGCCCGT
ATCGCCGATC AGTGGCTGCC GCTCAAAAAC GGATCCAACA TGGCGCTGGT CAACGCCTTC GCCAACGTGT
TGATCAGTGA AGGGCTCTAC AACAAGGAGT TCGTCGCCAA CTACACCGAG GGGTTTGACA CCTTCAAGGC
CACGGTCGCC AAGTACACCC CGGAATACGT GGAGGGGATC ACCGGCCTCA AAGCCGCTGA TATCCGCGCC
GCCATTCGCA CCTATGCTGC CTCGCCTGCT TCCATGATCC TGTGGGGCAT GGGGGTGACC CAGTACGGTC
AGGCGGTGGA TGTGGTCAAG GGGCTCGCGG GTCTGGCGTT GCTGACCGGC AACTTCGGTC GCCGTGGCAC
CGGCTGCGGT CCGGTGCGCG GGCAGAACAA CGTGCAGGGC ACCTGTGACA TGGGGATGCT GCCACACCAG
TTCCCGGGCT ATCAGTCGGT GAGCGATCCT GCGATCAGCG CCAAGTTTGC CAAGGCGTGG GGCGTACCGG
CGCTCTCCCA GAAGCCCGGC TACCGTCTGA CGGAGCTTGG CCACAAGGTG GAGGAGGGCA AGTGCAAGGC
CTTCTATATC TTTGGCGAAG ATCCGGCGCA GACTGAAGCC GATCTGGCCC AGTTCAGGCG CACCCTGGGC
GGCATGGAGC TGGTGATAGT GCAGGACATC TTCATGACCC AGACCGCCGA GATGGCGGAT GTGATCCTGC
CCGCCACCAG TTGGGGTGAG CACGAGGGGG TTTACAGCTC GGCAGATCGC GGCTTCCAGC GCTTCTACAA
GGCAGTTACG CCACCCGAGA ACGTGAAACC GGACTGGGCA ATCTTCTCGC TGATGGCCAC CGCCATGGGG
TACCCCATGG AGTATCGCGA CACCCAACAG ATCTGGGACG AGATGCGCGC CCTTTGCCCG CTCTATACCG
GGGTCAGCTA CGACAAGATA GCGGATCTCA AGAGCGTGCA GTGGCCTTGC CCGACCGAGG ATCACCCGGG
CACCAGCACC CTGTTCGAGG GGAATGTGTT CACCACCCCG AGTGGCAAGG GCCAGCTGAT TGCCTCCGAG
TGGCGTGCGC CGCTGGAGCA GCCTTGTGCT GAGTATCCGC TGGTGCTCTC CACCGTGCGG GAGGTGGGAC
ACTACTCCTG CCGCTCCATG ACAGGCAACT GCTCGGCGCT GCAGACCCTG GCCGATGAGC CCGGCTATGT
GCAGATCCAC CCGAGCGATG CGCAAAAGCT TGGGGTGAAG GATCAGGCGC TGGTGTGGAT CTCGTCGCGA
CGCGGCAAGG TGATCACCCG GGCCAACTAC AACGAGCGGG TCAACGCCGG TGTGGTCTAC ATGACCTACC
AGTGGTGGAT CGGGGCGTGC AACGAGCTGA CCATAGAGCA CCTTGATCCC GTCTCCTACA CCCCCGAGTA
CAAGTACTGC GCGGTGAAGA TTGAGCGTAT TGAGGATCAG CCTGAGGCGG AAGTGTACGT CCAGACTGAA
TACAGCGCGC TCAAGGCGAA ATTGCGCAGC GCCGCCAAGG GGTAA
Product
| Product | fdhA |
| Description | formate dehydrogenase |
| Modifications | 418..420,aa:Sec |
MKKVITVCPY CGTGCKINLL VENDKVVGAE GANGRTNEGQ LCLKGYYGWD FLNDTNLLTP RLKSPMIRRE
RGGKLESVSW DEAIDFASSR LSAIKTKYGA DAIMTTGSAR GPGNEANYVM QKFARAVLGT NNVDHCARVU
HAPSVSGLET TVGNGAMSNA IPEIQETKCL LVFGYNAADS HPIVARHILK AKANGAKVIV CDPRMVETAR
IADQWLPLKN GSNMALVNAF ANVLISEGLY NKEFVANYTE GFDTFKATVA KYTPEYVEGI TGLKAADIRA
AIRTYAASPA SMILWGMGVT QYGQAVDVVK GLAGLALLTG NFGRRGTGCG PVRGQNNVQG TCDMGMLPHQ
FPGYQSVSDP AISAKFAKAW GVPALSQKPG YRLTELGHKV EEGKCKAFYI FGEDPAQTEA DLAQFRRTLG
GMELVIVQDI FMTQTAEMAD VILPATSWGE HEGVYSSADR GFQRFYKAVT PPENVKPDWA IFSLMATAMG
YPMEYRDTQQ IWDEMRALCP LYTGVSYDKI ADLKSVQWPC PTEDHPGTST LFEGNVFTTP SGKGQLIASE
WRAPLEQPCA EYPLVLSTVR EVGHYSCRSM TGNCSALQTL ADEPGYVQIH PSDAQKLGVK DQALVWISSR
RGKVITRANY NERVNAGVVY MTYQWWIGAC NELTIEHLDP VSYTPEYKYC AVKIERIEDQ PEAEVYVQTE
YSALKAKLRS AAKG
Publication
- Reith ME, Singh RK, Curtis B, Boyd JM, Bouevitch A, Kimball J, Munholland J, Murphy C, Sarty D, Williams J, Nash JH, Johnson SC, Brown LL. (2008) The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen. BMC Genomics. 9:427-427. [abstract]