Recode v. 2.0 / Database of translational recoding events.

 

Details for "r201211"

Accession numberr201211 [export]
Locus nameGrdB
DescriptionGrdB
Recode statusReviewed

Organism

Genomic classBacteria (Chromosome)
OrganismClostridium difficile [details]

Sequence

GenBank IDs
SequenceDNA of 1308 nucleotides [sequence]
OrganisationSECIS structure (1)

Recoding event

Event typeSelenocysteine (position: 1048)
DescriptionSelenocysteine incorporation at UGA codon
ATGAGTAAAA TCAGAGTGGT TCATTATATA AACAATTTCT TTGCTGGTAT AGGTGGAGAG GAAAAAGCAG ATATTCCGCC AGAAAAAAGG GCTGGTGTAG TAGGACCTGG AATAGCATTT CAGAGTCAAT TTAATGATGA TGCAGAGATA ATCTCAACTG TAATTTGCGG AGATACGTAT TTTGGTGAAA ATATTGAGAG TGCAACTCAA GAACTTTTAA AAATGATAAA AGAAGAAAGC CCTGATTTAT TTATTGCAGG CCCAGCATTT AATGCAGGTA GATATGGAGT AGCTTGTGGG ACTATTTGTA AGGCAGTTGA AGAAGAGTTA AATATTCCTG TAATTACAGG CATGTATAAA GAAAATCCAG GTGTAGATAT GTTTAAATTA GATTTGCATA TAGTGTCTAC AGGAAATTCA GCAGCAAGTC TTAGAAAGGT AGTTCCAATA ATGACAAAAC TAGGTCTTAA ATTGGTTAGA GGTGAGGAAA TAGGACCTCC TGAAGAGGAA GGATATATAA TGAGAGGAAT AAGAAAAAAT TTCTTCCATG AACTTAGAGG GTCTGAAAGA GCAATTGATA TGTTGGTTAA AAAGATGAAA GGGGAAAGCT TTGAAACTGA GTATCCAATG CCTGAATTTG ATAGAGTTAC ACCTATGAAA CCTGTTAAAG ATTTATCTAA GATAAAACTT GCCCTAGTAA CTTCTGGAGG GATAGTTCCA ATTGATAATC CAGACAAAAT TGAATCTTCA AGTGCTACTA AATATGGAAT TTACGATTTA ACAGATATGG ATTCTATGTC AAATAAAGAA TTTACAACTA TACATGGGGG GTATGACAGA GCATATGTCC TTGAAAATCC AAATTTAGTT GTACCACTAG ATGTAGTTAG AGAGCTTGAA AAAGAAGGTG TAATTGGAGA ATTAGTAGAT TATTTTATAA CTACTACAGG AACAGGAACG AGTGTTGGCA ATTCTAAGAG ATTTGGAGAA GAGTTTTCTA AGAAATTGTT AGAAGATGAT GTAGATGCTG TAATTTTAAC TTCTACATGA GGTACTTGTA CTCGTTGTGG AGCAACGATG GTAAAAGAGA TTGAGAGAGC TGGTATAGCA GTTGTTCATA TATGTACAGT AGTACCAATA TCACTTACAA TAGGAGCTAA TAGAATTGTT CCAGCAGTAG GGATACCATA TCCACTTGGA AATCCTATGT TAGGAGAAGA GGAAAGTAAA AAAATTAGAA AGAATATAGT TTTAAAAGCT TTAAATGCAC TAACAGAAGA TATAGAAGAA CAAACAGTAT TTGAATAA

Product

ProductGrdB
DescriptionGrdB
Modifications1048..1050,aa:Sec
MSKIRVVHYI NNFFAGIGGE EKADIPPEKR AGVVGPGIAF QSQFNDDAEI ISTVICGDTY FGENIESATQ ELLKMIKEES PDLFIAGPAF NAGRYGVACG TICKAVEEEL NIPVITGMYK ENPGVDMFKL DLHIVSTGNS AASLRKVVPI MTKLGLKLVR GEEIGPPEEE GYIMRGIRKN FFHELRGSER AIDMLVKKMK GESFETEYPM PEFDRVTPMK PVKDLSKIKL ALVTSGGIVP IDNPDKIESS SATKYGIYDL TDMDSMSNKE FTTIHGGYDR AYVLENPNLV VPLDVVRELE KEGVIGELVD YFITTTGTGT SVGNSKRFGE EFSKKLLEDD VDAVILTSTU GTCTRCGATM VKEIERAGIA VVHICTVVPI SLTIGANRIV PAVGIPYPLG NPMLGEEESK KIRKNIVLKA LNALTEDIEE QTVFE