Recode v. 2.0 / Database of translational recoding events.

 

Details for "r201212"

Accession numberr201212 [export]
Locus nameGrdB 2
DescriptionGrdB 2
Recode statusReviewed

Organism

Genomic classBacteria (Chromosome)
OrganismClostridium difficile [details]

Sequence

GenBank IDs
SequenceDNA of 1311 nucleotides [sequence]
OrganisationSECIS structure (1)

Recoding event

Event typeSelenocysteine (position: 1048)
DescriptionSelenocysteine incorporation at UGA codon
ATGGGAAAAC TAAAAGCAGT ACATTATATT AATCAGTTCT TTGCTGGTAT AGGTGGAGAA GAAAAAGCTG ATACTAAGCC ACATGTGGCA GAAACTTTAC CTCCAATAAG TTTACAACTT GATAAATTAT TAGGTGAAGA TATTGAAATA GTTGGAACAG TAGTTTGTGG AGATAGCTAT TTCAATGAAA ATATAGATAG TGCAAGTGAA GAAGTTTTAT CAATGGTAAA AGGTTTTGAA CCACAACTTT TCATAGCTGG TCCTGCATTT AATGCTGGGA GATATGGGGT TGCTGCTGGA ACAATAACTA AAGTTGTAAA AGATGCTTTG AATATACCAG CTTTAACAGG TATGTATGTT GAAAATCCAG GAGCAGATAT GTTCAAAAAG GATGTTTATG TAGTAGAAAC TTCTGATTCT GCAGCAGGTA TGAGAAAGGC ACTTCCTAAG ATAGCTAAAC TTGCAGTAAA ACTTGCTAAT GGAGAAGAAA TTGGAACTCC TAAAGATGAA GGATACATAG CTAGAGGAAT AAGAGTTAAC TACTTCCATG AAGACAGAGG TTCTAAGAGA GCTGTTGACA TGTTAGTTAA GAAAATAAAA GGTGAACCAT TTGAAACTGA ATACCCAATG CCAAACTTTG ATAGAGTTGA CCCAAGTAAA GCTGTAAAAG ATTTATCAAA ATGTAAAATA GCTTTAGTTA CTTCTGGTGG TATAGTTCCA AAAGGAAATC CAGATAGAAT AGAGTCTTCT TCAGCTTCTA AATATGGAAC TTATTCTATA GCAGGAGTTA TGGATTTAAC AGAAGAGACT TATGAAACTG CACATGGTGG ATATGACCCA GTGTATGCAA ATTTAGATGC AGATAGAGTA TTACCTGTTG ATGTTCTTAG AGATTTAGAA AAAGAAGGTG TAATTGGAAA ATTACATGAG ACTTTCTATA CAACTGTAGG TAATGGTACA TCTGTTGCAA ACTCTAAAAA ATATGCTTCT GAAATTGGAG CAGCATTAGT GGCTGATGGT GTAGATGCAG TAATATTAAC TTCTACATGA GGTACTTGTA CTCGTTGCGG TGCAACGATG GTAAAAGAAA TAGAAAAAAC TGGACTTCCA GTAGTTCATA TGTGTACAGT AGTACCTATT TCATTAACAG TAGGGGCTAA TAGAATAGTT CCAACTATAG CAATACCTCA TCCACTTGGA AATCCAGCGC TTGACCCTAC AGAAGAAAAA GCCCTAAGAA GAGGCCTTGT AGAAAAAGCA TTAAATGCTT TAACTACAGA AGTAGATGGT CAAACAGTAT TTGAAAAATA A

Product

ProductGrdB 2
DescriptionGrdB 2
Modifications1048..1050,aa:Sec
MGKLKAVHYI NQFFAGIGGE EKADTKPHVA ETLPPISLQL DKLLGEDIEI VGTVVCGDSY FNENIDSASE EVLSMVKGFE PQLFIAGPAF NAGRYGVAAG TITKVVKDAL NIPALTGMYV ENPGADMFKK DVYVVETSDS AAGMRKALPK IAKLAVKLAN GEEIGTPKDE GYIARGIRVN YFHEDRGSKR AVDMLVKKIK GEPFETEYPM PNFDRVDPSK AVKDLSKCKI ALVTSGGIVP KGNPDRIESS SASKYGTYSI AGVMDLTEET YETAHGGYDP VYANLDADRV LPVDVLRDLE KEGVIGKLHE TFYTTVGNGT SVANSKKYAS EIGAALVADG VDAVILTSTU GTCTRCGATM VKEIEKTGLP VVHMCTVVPI SLTVGANRIV PTIAIPHPLG NPALDPTEEK ALRRGLVEKA LNALTTEVDG QTVFEK